View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_32 (Length: 310)
Name: NF9311_low_32
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_32 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 10433924 - 10434206
Alignment:
| Q |
19 |
agtaaaagttgaactaactgatggatggtaagaatttcaactgtgccgtgtgaaaataaaagaggttccctaaaacacaaagtgattttctttcacaggt |
118 |
Q |
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| T |
10433924 |
agtaaaagttgaactaactgatggatggtaagaatttcaactgtgccgtgtgaaaataaaagaggttccctaaaacacaaagtgattttctttcgcaggt |
10434023 |
T |
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| Q |
119 |
attctataaatgccattttagatgctccattgtcaaagcaactggatgctggaagattatttgtaggacagaagcttcgggtaatgtgttggtctgaatt |
218 |
Q |
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| T |
10434024 |
attctataaatgccattttagatgctccattgtcaaagcaactggatgctggaagattatttgtaggacagaagcttcgggtaatgtgttggtctgaatt |
10434123 |
T |
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| Q |
219 |
ttgtctatgactataacacacttaatacttgatactgaattttgttttcatattttttgtgcagatctggggagcagaattat |
301 |
Q |
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| T |
10434124 |
ttgtctatgactataacacacttaatacttgatactgaattttgttttcatattttttgtgcagatctggggagcagaattat |
10434206 |
T |
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Target: scaffold0191 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 28330 - 28048
Alignment:
| Q |
19 |
agtaaaagttgaactaactgatggatggtaagaatttcaactgtgccgtgtgaaaataaaagaggttccctaaaacacaaagtgattttctttcacaggt |
118 |
Q |
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| T |
28330 |
agtaaaagttgaactaactgatggatggtaagaatttcacctgtgccgtgtgaaaataaaagaggttccctaaaacacaaagtgattttctttcgcaggt |
28231 |
T |
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| Q |
119 |
attctataaatgccattttagatgctccattgtcaaagcaactggatgctggaagattatttgtaggacagaagcttcgggtaatgtgttggtctgaatt |
218 |
Q |
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| T |
28230 |
attctataaatgccattttagatgctccattgtcaaagcaactggatgctggaagattatttgtaggacagaagcttcgggtaatgtgttggtctgaatt |
28131 |
T |
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| Q |
219 |
ttgtctatgactataacacacttaatacttgatactgaattttgttttcatattttttgtgcagatctggggagcagaattat |
301 |
Q |
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| T |
28130 |
ttgtctatgactataacacacttaatacttgatactgaattttgttttcatattttttgtgcagatctggggagctgaattat |
28048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 37572218 - 37572310
Alignment:
| Q |
114 |
caggtattctataaatgccattttagatgctccattgtcaaagcaactggatgctggaagattatttgtaggacagaagcttcgggtaatgtg |
206 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37572218 |
caggtattctattaatgccattttagatgttccattgtcaaagcaactggctgctggaagattgtttgtaggacagaagcttcgggtaatgtg |
37572310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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