View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_33 (Length: 307)
Name: NF9311_low_33
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 21432644 - 21432938
Alignment:
| Q |
1 |
acaacccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacaca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
21432644 |
acaatccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagacttcatgaggaggaaatttctagagtgcgaagcttacaca |
21432743 |
T |
|
| Q |
101 |
cacggaatttattaaactgtagaaagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaat |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21432744 |
cacggaatttattaaaccgtagaaagctttgcttggttctggacttagatcacacactgctaaataccacttcccttcatcgtttgagcccagaagaaat |
21432843 |
T |
|
| Q |
201 |
gcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgcaccattttatagaagttttacttgatgcatttccccatctgtgct |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21432844 |
gcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgcaccattttatagaagttttacttaatgcatttccccatctgtgct |
21432938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 27099785 - 27099529
Alignment:
| Q |
1 |
acaacccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacaca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
27099785 |
acaatccaactattctacatgatttaaatatggagattttcatatgttcagggactaagacttcatgatgaggaaatttctagagtgcgcagcttacaca |
27099686 |
T |
|
| Q |
101 |
cacggaatttattaaactgtagaaagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaat |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||| |||| ||||||| |
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| T |
27099685 |
cacggaatttattaaaccgtagaaagctttgcttggttctggacttagatcacacacagataaataccacttcccttcatcctttgaacccaaaagaaat |
27099586 |
T |
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| Q |
201 |
gcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgcaccattt |
257 |
Q |
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||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27099585 |
gcaattgaaaacctatacagattctctagaaggtatgtgccaactaatgcaccattt |
27099529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 27151454 - 27151751
Alignment:
| Q |
1 |
acaacccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacaca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| ||||||| |||||||| ||| |
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| T |
27151454 |
acaatccaactattctacatgatttaaatatggagatttttgtatgttcagggactaagacttcacgatgaggaaatttgtagagtgtgcagcttagaca |
27151553 |
T |
|
| Q |
101 |
cacggaatttattaaactgtagaaagctttgcttgg---ttctggacttagatcacacactgctaaataccacttctcttcatcgtttgag-cccagaag |
196 |
Q |
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||| ||||||| ||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||| | ||||||| |||||| |||||||| |
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| T |
27151554 |
cacagaattta-taaaccatagaaagctttgcttggttattctgggcctagatcacacactgctaaataccactccccttcatcatttgagccccagaag |
27151652 |
T |
|
| Q |
197 |
aaatgcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgcaccattttatagaagttttacttgatgcatttccccatctgtgct |
295 |
Q |
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||||||||||||||| || |||||||||||||||| |||| ||||| | |||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
27151653 |
aaatgcatttaaaaatctatacagattctctagaaagtatatgccaccgaatgcaccattttataaaagttttacttgatgcatttccccatctctgct |
27151751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 26988599 - 26988829
Alignment:
| Q |
24 |
ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga |
123 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| |||| | || ||||||||||||||||||||||| | || |||||||||||| ||||| |
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| T |
26988599 |
ttaaatatggaaatttttgtatgttcagggactaaaacttgatgataaggaaatttctagagtgcgcagcagagacgtgaagaatttattaaatcgtaga |
26988698 |
T |
|
| Q |
124 |
aagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagatt |
223 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26988699 |
aagctttgcttggttctagacttagatcacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagatt |
26988798 |
T |
|
| Q |
224 |
ctctagaaggt-atgtgccaaccaatgcacc |
253 |
Q |
| |
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||||||||||| || |||||||| ||||||| |
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| T |
26988799 |
ctctagaaggtaatatgccaaccgatgcacc |
26988829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 27076659 - 27076449
Alignment:
| Q |
25 |
taaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtagaa |
124 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||| | || |||||||||||||||||||| || || || |||||||||||| |||||| |
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| T |
27076659 |
taaatatggagatttttgtgttttcagggactaaaacttgatgataaggaaatttctagagtgcgcggcatagacgtgaagaatttattaaatcgtagaa |
27076560 |
T |
|
| Q |
125 |
agctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattc |
224 |
Q |
| |
|
||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27076559 |
agctttgtttggttctagacctagatcacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattc |
27076460 |
T |
|
| Q |
225 |
tctagaaggta |
235 |
Q |
| |
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||||||||||| |
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| T |
27076459 |
tctagaaggta |
27076449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 27027917 - 27028128
Alignment:
| Q |
24 |
ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga |
123 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| | || |||||||||||||||||||| | || || |||||||||||| ||||| |
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| T |
27027917 |
ttaaatatggagatttttgtattttcagggactaaaacttgatgataaggaaatttctagagtgcgcgacatagacgtgaagaatttattaaatcgtaga |
27028016 |
T |
|
| Q |
124 |
aagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagatt |
223 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
27028017 |
aagctttgtttggttctggacctagatcacacactgctaaataccacttttctttaccgtttgagctcagaagaaatgcatttaaaaacccatacagatt |
27028116 |
T |
|
| Q |
224 |
ctctagaaggta |
235 |
Q |
| |
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|||||||||||| |
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| T |
27028117 |
ctctagaaggta |
27028128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 34690675 - 34690905
Alignment:
| Q |
24 |
ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga |
123 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |||| | || ||||||||||||||||||||||| | || |||||||||||| ||||| |
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| T |
34690675 |
ttaaatatggaaatttttgtatgttcagggactaaaacttgatgataaggaaatttctagagtgcgcagcagagacgtgaagaatttattaaatcgtaga |
34690774 |
T |
|
| Q |
124 |
aagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagatt |
223 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34690775 |
aagctttgcttggttcttgacttagatcacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagatt |
34690874 |
T |
|
| Q |
224 |
ctctagaaggt-atgtgccaaccaatgcacc |
253 |
Q |
| |
|
||||||||||| || |||||||| ||||||| |
|
|
| T |
34690875 |
ctctagaaggtaatatgccaaccgatgcacc |
34690905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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