View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_35 (Length: 291)
Name: NF9311_low_35
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_35 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 28288711 - 28288999
Alignment:
| Q |
6 |
atatatatcatacacgtgaaaaatttagcttttgaatgagtgactcagagcataaatatagtgagcacttgcataaaaccgtttttctggtgagaaaaat |
105 |
Q |
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| T |
28288711 |
atatatatcatacacgtgaaaaatttagcttttgaatgagtgactcagagcataaatatagtgagcacttgcataaaaccgtttttctggtgagaaaaat |
28288810 |
T |
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| Q |
106 |
gaggcaaagcttgactaaccgattcaagggcttcttcaagcttttgcgtacaagattcatttttggatatagccctaannnnnnncattaacttctgaaa |
205 |
Q |
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| T |
28288811 |
gaggcaaagcttgactaaccgattcaagggcttcttcaagcttttgcgtacaagattcatttttggatatagccctaatttttttcattaacttctgaaa |
28288910 |
T |
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| Q |
206 |
taaataaacta------------acaacagaaaatggcttcttcatactccgagggcttgaaaacctatggctcctccgccctctctgc |
282 |
Q |
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| T |
28288911 |
taaataaactaacatctaaaattacaacagaaaatggcttcttcatactccgagggcttgaaaacctatggctcctccgccctctctgc |
28288999 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 8253328 - 8253267
Alignment:
| Q |
17 |
acacgtgaaaaatttagcttttgaatgagtgactcagagcataaatatagtgagcacttgcat |
79 |
Q |
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| T |
8253328 |
acacgtgaaaaatccagcttttgaatgagctactcaaagcataaatatag-gagcacttgcat |
8253267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 14256 - 14193
Alignment:
| Q |
56 |
cataaatatagtgagcacttgcataaaaccgtttttctggtgagaaaaatgaggcaaagcttgact |
121 |
Q |
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| T |
14256 |
cataattatagggagcatttgcataaaa--gtttttcaggggagaaaaataaggcaaagcttgact |
14193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 14329079 - 14329027
Alignment:
| Q |
14 |
catacacgtgaaaaatttagcttttgaatgagtgactcagagcataaatatag |
66 |
Q |
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| T |
14329079 |
catacatgtgaaaaattaagcttttgaatgagtcactaaaagcagaaatatag |
14329027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 14422089 - 14422037
Alignment:
| Q |
14 |
catacacgtgaaaaatttagcttttgaatgagtgactcagagcataaatatag |
66 |
Q |
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| T |
14422089 |
catacatgtgaaaaattaagcttttgaatgagtcactaaaagcagaaatatag |
14422037 |
T |
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