View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9311_low_39 (Length: 286)

Name: NF9311_low_39
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9311_low_39
NF9311_low_39
[»] chr1 (11 HSPs)
chr1 (18-269)||(13067736-13067987)
chr1 (193-269)||(13094955-13095031)
chr1 (193-269)||(13130384-13130460)
chr1 (193-269)||(13162077-13162153)
chr1 (184-268)||(30367666-30367750)
chr1 (189-270)||(13205011-13205092)
chr1 (189-270)||(13069747-13069828)
chr1 (189-241)||(13010793-13010845)
chr1 (189-267)||(13007740-13007818)
chr1 (215-255)||(14708007-14708047)
chr1 (191-267)||(13101542-13101618)
[»] chr6 (1 HSPs)
chr6 (195-266)||(31396239-31396310)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 13067987 - 13067736
Alignment:
Q  18 tattaaagtatgttatggagtattcaattatcacttagttgtgatttcacattcacattagttatttctatttcaaatgttagagctatattgctcaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13067987 tattaaagtatgttatggagtattcaattatcacttagttgtgatttcacattcacattagttatttctatttcaaatggtagagctatattgctcaaca 13067888  T
Q  118 accaaaactgaaaactaactaactgtaaaaacagttataaaactctatctctaatattacttgtttttcgcgtttggaaaatgttatgctttcatacaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13067887 accaaaactgaaaactaactaactgtaaaaacagttataaaactctatctctaatattacttgtttttcgcgtttggaaaatgttatgctttcatacaag 13067788  T
Q  218 aatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaacat 269  Q
    ||||| || | |||||||||||||||||||||||||||||||||||||||||    
T  13067787 aatcgttcaatattttcttgggctaccttgaacttcttttcatgaccaacat 13067736  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 13094955 - 13095031
Alignment:
Q  193 ggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaacat 269  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| || ||||||||||    
T  13094955 ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacat 13095031  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 13130384 - 13130460
Alignment:
Q  193 ggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaacat 269  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| || ||||||||||    
T  13130384 ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacat 13130460  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 13162077 - 13162153
Alignment:
Q  193 ggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaacat 269  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| || ||||||||||    
T  13162077 ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacat 13162153  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 30367750 - 30367666
Alignment:
Q  184 ttcgcgtttggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaaca 268  Q
    ||||||||||| ||||||||  |||||||||||||||||||| ||||||||||  ||||||||| |||||||||| |||||||||    
T  30367750 ttcgcgtttggcaaatgttacactttcatacaagaatcggtcaagattttcttcagctaccttgtacttcttttcttgaccaaca 30367666  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 13205011 - 13205092
Alignment:
Q  189 gtttggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaacatg 270  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||||| |||| || | ||||||||||| |||||||||||    
T  13205011 gtttggaaaatgttatactttcatataagaatcggtcaagattttcttcggcttcccttaacttcttttcttgaccaacatg 13205092  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 13069828 - 13069747
Alignment:
Q  189 gtttggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaacatg 270  Q
    |||||||||||||||| | |||||||||||| ||||| |||||||||| |||| || | ||||||||||| |||| ||||||    
T  13069828 gtttggaaaatgttataccttcatacaagaaacggtcaagattttcttcggcttcccttaacttcttttcttgacgaacatg 13069747  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 13010793 - 13010845
Alignment:
Q  189 gtttggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggct 241  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  13010793 gtttggaaaatgttatactttcatacaagaatcggtcaagattttcttcggct 13010845  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 13007740 - 13007818
Alignment:
Q  189 gtttggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaac 267  Q
    |||||||||||||||| |||||||||||||| | ||| ||||||| || |||| |||| |||||| |||| ||||||||    
T  13007740 gtttggaaaatgttattctttcatacaagaaactgtcaagatttttttcggcttcctttaacttcctttcttgaccaac 13007818  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 14708007 - 14708047
Alignment:
Q  215 aagaatcggtcgagattttcttgggctaccttgaacttctt 255  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  14708007 aagaatcggtcgagattttcgtgggctaccttgaatttctt 14708047  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 13101542 - 13101618
Alignment:
Q  191 ttggaaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaac 267  Q
    |||||||| || || |||||||||||||| | ||| |||||||||| |||| || | | |||| |||||||||||||    
T  13101542 ttggaaaacgtaatactttcatacaagaacctgtcaagattttcttcggcttcccttagcttcctttcatgaccaac 13101618  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 31396310 - 31396239
Alignment:
Q  195 aaaatgttatgctttcatacaagaatcggtcgagattttcttgggctaccttgaacttcttttcatgaccaa 266  Q
    |||||||||| || ||||||||||||||||  ||||||||||||||||||| | || ||||||| |||||||    
T  31396310 aaaatgttatactgtcatacaagaatcggttaagattttcttgggctacctcgtacctcttttcttgaccaa 31396239  T

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