View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_4 (Length: 563)
Name: NF9311_low_4
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 13883955 - 13884497
Alignment:
| Q |
1 |
agcagggaagagctccaacagcagctagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataaggcaaaggaacttg |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13883955 |
agcagggaagagctccaacagcagccagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataaggcaaaggaacttg |
13884054 |
T |
|
| Q |
101 |
gttacaaaaatggaatgaaatgacaaatgagttatttgtttctaaggagtggtagcacaaaattttcttgtgacaagatcttgctaaattttaacatgtg |
200 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13884055 |
gttacaaaaatggaatgaaatgacata-gagttatttgtttctaaggagtgctagcacaaaattttcttgtgacaagatcttgctaaattttaacatgtg |
13884153 |
T |
|
| Q |
201 |
agtatatccattcctgaaaacaaacattgttgctttgaacacttacaacttgtccttgggaactttgatcagtagatgactctgaagtccttttctcgcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13884154 |
agtatatccattcctgaaaacaaacattgttgctttgaacacttacagcttgtccttgggaactttgatcagtagatgactctgaagtccttttctcgcg |
13884253 |
T |
|
| Q |
301 |
gtttcttctttcgtgcactaaaagaattgcacatttgcaagtgaaatataggagcaacaatccaagagagaaaatgataacgaattcgatgacaataatt |
400 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13884254 |
gtttcttctttcgtgcactagaagaattgcgcatttgcaagtgaaatataggagcaacaatccaagagagaaaatgataacgaattcgatgacaataatt |
13884353 |
T |
|
| Q |
401 |
gatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtatgcttctacattctattgaatttaaaggcag-ttttcgac |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
13884354 |
gatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtatgcttctatattctattgaatttaaaggcagtttttcgac |
13884453 |
T |
|
| Q |
500 |
taaactcagattatgaaacctgcaacttaccgtgagcaagaaat |
543 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13884454 |
taaactcagattatgaaacctgcaacttaccgtgagcaagaaat |
13884497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 14024080 - 14024622
Alignment:
| Q |
1 |
agcagggaagagctccaacagcagctagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataaggcaaaggaacttg |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14024080 |
agcagggaagagctccaacagcagccagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataaggcaaaggaacttg |
14024179 |
T |
|
| Q |
101 |
gttacaaaaatggaatgaaatgacaaatgagttatttgtttctaaggagtggtagcacaaaattttcttgtgacaagatcttgctaaattttaacatgtg |
200 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14024180 |
gttacaaaaatggaatgaaatgacata-gagttatttgtttctaaggagtgctagcacaaaattttcttgtgacaagatcttgctaaattttaacatgtg |
14024278 |
T |
|
| Q |
201 |
agtatatccattcctgaaaacaaacattgttgctttgaacacttacaacttgtccttgggaactttgatcagtagatgactctgaagtccttttctcgcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14024279 |
agtatatccattcctgaaaacaaacattgttgctttgaacacttacagcttgtccttgggaactttgatcagtagatgactctgaagtccttttctcgcg |
14024378 |
T |
|
| Q |
301 |
gtttcttctttcgtgcactaaaagaattgcacatttgcaagtgaaatataggagcaacaatccaagagagaaaatgataacgaattcgatgacaataatt |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14024379 |
gtttcttctttcgtgcactagaagaattgcgcatttgcaagtgaaatataggagcaacaatccaagagagaaaatgataacgaattcgatgacaataatt |
14024478 |
T |
|
| Q |
401 |
gatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtatgcttctacattctattgaatttaaaggcag-ttttcgac |
499 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
14024479 |
gatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtatgcttctatattctattgaatttaaaggcagtttttcgac |
14024578 |
T |
|
| Q |
500 |
taaactcagattatgaaacctgcaacttaccgtgagcaagaaat |
543 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14024579 |
taaactcagattatgaaacctgcaacttaccgtgagcaagaaat |
14024622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 7684637 - 7685118
Alignment:
| Q |
1 |
agcagggaagagctccaacagcagctagtgaaattagtagcattctcaggtatgttcatgcttgactgcatgtaaatgtgacataaggcaaaggaacttg |
100 |
Q |
| |
|
|||||||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||| ||| || |
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| T |
7684637 |
agcagggaagagatccaacagcaaccagtgaaattagtagcattctcaggtatggtcatgcttgactgaatgtaaatgtgaaacaaggcaagagaagatg |
7684736 |
T |
|
| Q |
101 |
gttacaaaaatggaatgaaatgacaaatgagttatttgtttctaaggagtggtagcacaaaattttcttgtgacaagatcttgc----taaattttaaca |
196 |
Q |
| |
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|||| ||| | | || |||| |||||||||||| ||| ||| || | ||||||||| |||||| ||||||||||||| | |||| ||||||| |
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| T |
7684737 |
gttaaaaata-gaaaagaaacgacaaatgagtttttttttt------agagctagcacaaatttttctcgtgacaagatcttacatactaaaatttaaca |
7684829 |
T |
|
| Q |
197 |
tgtgagtatatccattcctgaaaacaaa--cattgttgctttgaacacttacaacttgtccttgggaactttgatcagtagatgactctgaagtcctttt |
294 |
Q |
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||||| | ||||||||||||| ||||| ||| | ||| ||| |||||||| |||||||| |||||||||||||||||| | ||| ||||| ||||| |
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| T |
7684830 |
tgtga--aaatccattcctgaatacaaaaacatcgatgcattgtgcacttacagtttgtccttcggaactttgatcagtagaggcctcggaagttctttt |
7684927 |
T |
|
| Q |
295 |
ctcgcggtttcttctttcgtgcactaaaagaattgcacatttgcaagtgaaatataggagcaacaatccaagagagaaaatgataacgaattcgatgaca |
394 |
Q |
| |
|
||| ||||||||||| ||||| | |||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||||| |
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| T |
7684928 |
ctcattctttcttctttcatgcacaaggagaattgcacatttacaagtgaaatatagaagcaacaatccgagacagaaaatgataacgaactcgatgaca |
7685027 |
T |
|
| Q |
395 |
ataattgatcccaaggctgttatacaaattgaaagagcatgtaagttactgaacaaaacacctgtatgcttctacattctattgaatttaa |
485 |
Q |
| |
|
||||||| ||| ||||||||| |||||| |||||| | |||||| | || ||| || |||||||||||| |||||||||| |||| |
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|
| T |
7685028 |
ataattgttcctaaggctgttgcacaaataaaaagagattttaagttgcagagaaaaccatatgtatgcttctattttctattgaacttaa |
7685118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 500 - 543
Target Start/End: Original strand, 7685148 - 7685191
Alignment:
| Q |
500 |
taaactcagattatgaaacctgcaacttaccgtgagcaagaaat |
543 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
7685148 |
taaactcagattatgaaatctgcaacttactgtgagcaagaaat |
7685191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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