View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_42 (Length: 268)
Name: NF9311_low_42
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 28932987 - 28932750
Alignment:
| Q |
17 |
acttatttcgccgctaggagtggaatgaacacgccgtctcttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtcc |
116 |
Q |
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| T |
28932987 |
acttatttcgccgctaggagtggaacgaacacgccgtctcttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtct |
28932888 |
T |
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| Q |
117 |
acaatttttgcatcctttaatttttggaaggaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932887 |
acaatttttgcatcctttaatttttggaaggaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccag |
28932788 |
T |
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| Q |
217 |
atgcaaattcctggtttttctcttcctcgggtgatgtc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28932787 |
atgcaaattcctggtttttctcttcctcgggtgatgtc |
28932750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 251
Target Start/End: Complemental strand, 10187222 - 10187019
Alignment:
| Q |
47 |
acgccgtctcttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtccacaatttttgcatcctttaatttttggaag |
146 |
Q |
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| T |
10187222 |
acgctgtctcttaggtgagttactacttagctcctcctttagtatgtcataacctttcttggtcatgtccacaatttt-gcatcctttaatttttggaag |
10187124 |
T |
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| Q |
147 |
gaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccagatgcaaattcctggtttttctcttcctcgg |
246 |
Q |
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| T |
10187123 |
gaagtagaaaccattggtgacgaaaaggttgacttaaatttgccaaacaatgattctgaagcattgccagacggagattcctcgtttttctcttcctcag |
10187024 |
T |
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| Q |
247 |
gtgat |
251 |
Q |
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||||| |
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| T |
10187023 |
gtgat |
10187019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 35121072 - 35121309
Alignment:
| Q |
17 |
acttatttcgccgctaggagtggaatgaacacgccgtctcttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtcc |
116 |
Q |
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|||| |||||||||||||||||||||||||| || |||||||||||| | | ||||||||||||| |||||||| |||||||||||||||| |||||| |
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| T |
35121072 |
acttgtttcgccgctaggagtggaatgaacaggctgtctcttaggtgtgttgccacttagttcctcctttagtatgtcataacctttcttggtcatgtcc |
35121171 |
T |
|
| Q |
117 |
acaatttttgcatcctttaatttttggaaggaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||| ||| |||| |
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| T |
35121172 |
acaatttttgcatcctttaatttttggaaggaagtagaaacttttggtgacgaaaaggttgacttaaattttccaaacaatgactctgaagcattgccag |
35121271 |
T |
|
| Q |
217 |
atgcaaattcctggtttttctcttcctcgggtgatgtc |
254 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||| |
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| T |
35121272 |
aagcagattcctggtttttctcttcctcgggtgatgtc |
35121309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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