View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_44 (Length: 257)
Name: NF9311_low_44
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11779002 - 11779242
Alignment:
| Q |
1 |
gattattttgcagaaaattcaagcttatacactcatgaaaaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaaaagtttct |
100 |
Q |
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| T |
11779002 |
gattattttgcagaaaattccagcttatacactcatgaaaaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaaaagtttct |
11779101 |
T |
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| Q |
101 |
tttcttctgcattttttatatggaagttcatttccttataataaaagcttgtttagattgatttatttaaactctttttatcagtacatacatttgcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11779102 |
tttcttctgcattttttatatggaagttcatttccttataataaaagcttgtttagattgatttatttaaactctttttatcagtacatacatttgcaag |
11779201 |
T |
|
| Q |
201 |
attgttcgagagagtttacnnnnnnnttcatgacatacatg |
241 |
Q |
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| T |
11779202 |
attgttcgagagagtttacaaaaaaattcatgacatacatg |
11779242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 11764591 - 11764706
Alignment:
| Q |
1 |
gattattttgcagaaaattcaagcttatacactcatgaaaaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaaaagtttct |
100 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11764591 |
gattatttttcagaaaattccagcttatacactcatgaaaaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaaaagtttct |
11764690 |
T |
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| Q |
101 |
tttcttctgcattttt |
116 |
Q |
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| T |
11764691 |
tttcttctgcattttt |
11764706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 11784419 - 11784623
Alignment:
| Q |
1 |
gattattttgcagaaaattcaagcttatacactcatgaaaaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaaaagtttct |
100 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |||| || |
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| T |
11784419 |
gattattttgtagaaaattccagcttatacactcatgaaaaatacgtatccatggtagttggtaatcttacaacagtgatcaaagtatgtaagagttact |
11784518 |
T |
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| Q |
101 |
tttcttctgcattttttatatggaagttcatttccttataataaaagcttgtttagattgatttatttaaactctttttatcagtacatac-atttgcaa |
199 |
Q |
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|| |||||| | ||||||||| ||||||| ||| ||||||||||||| | |||| ||||| ||||||||||| |||||||||||||| || ||||| || |
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| T |
11784519 |
ttacttctgta-tttttatattgaagttcttttggttataataaaagcatttttaaattgacttatttaaact-tttttatcagtacaaacaatttgtaa |
11784616 |
T |
|
| Q |
200 |
gattgtt |
206 |
Q |
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||||||| |
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| T |
11784617 |
gattgtt |
11784623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 11770779 - 11770925
Alignment:
| Q |
1 |
gattattttgcagaaaattcaagcttatacactcatgaaaaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaaaagtttct |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| | ||| | ||||||||||||||||||| || |
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| T |
11770779 |
gattattttgcagaaaattccagcttatacactcatgaaaaatatgtatcaatggtggttggtaatattacaacttggatcaaagtatgtaaaagtcact |
11770878 |
T |
|
| Q |
101 |
tttcttctgcatttttt--atatggaagttcatttccttataataaa |
145 |
Q |
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|| ||||| ||||||| |||| ||||||||||| |||||||||| |
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|
| T |
11770879 |
ttacttctatatttttttaatattaaagttcatttcgttataataaa |
11770925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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