View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_45 (Length: 256)
Name: NF9311_low_45
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 48894664 - 48894437
Alignment:
| Q |
15 |
gagagcatctttaattagacaagaggatacaatcatatttagtgtgattgagagagcaagattcccacttaattctcccacctaccatcaacattatgct |
114 |
Q |
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| T |
48894664 |
gagagcatctttaattagacaagaggatacaatcatatttagtgtgattgagagagcaagattcccacttaattctcccacctaccatcaacattatgct |
48894565 |
T |
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| Q |
115 |
tccattcctcacttttctggctccttgctcgatgtcgttcttgactatacagaagccattcaagccaaggtagttgctacttcctaccttgcttaattac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894564 |
tccattcctcacttttctggctccttgctcgatgtcgttcttgactatacagaagccattcaagccaaggtagttgctacttcctaccttgcttaattac |
48894465 |
T |
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| Q |
215 |
agatattatttatttcctctcatatttg |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48894464 |
agatattatttatttcctctcatatttg |
48894437 |
T |
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