View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9311_low_5 (Length: 515)

Name: NF9311_low_5
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9311_low_5
NF9311_low_5
[»] chr5 (29 HSPs)
chr5 (205-497)||(8344566-8344872)
chr5 (205-499)||(42824767-42825075)
chr5 (1-132)||(12399092-12399223)
chr5 (1-132)||(34208538-34208669)
chr5 (1-132)||(29874954-29875085)
chr5 (1-132)||(23090298-23090429)
chr5 (1-132)||(4145694-4145825)
chr5 (1-132)||(4695308-4695439)
chr5 (1-133)||(3077596-3077728)
chr5 (1-117)||(42757956-42758072)
chr5 (404-490)||(22913689-22913775)
chr5 (247-337)||(22913478-22913568)
chr5 (19-117)||(12096367-12096466)
chr5 (63-132)||(41610625-41610694)
chr5 (63-132)||(42793040-42793109)
chr5 (1-67)||(22646055-22646121)
chr5 (65-129)||(4434783-4434847)
chr5 (99-135)||(29875198-29875234)
chr5 (99-135)||(42793562-42793598)
chr5 (100-134)||(23090543-23090577)
chr5 (99-132)||(12398946-12398979)
chr5 (100-133)||(41610372-41610405)
chr5 (99-132)||(42757805-42757838)
chr5 (21-133)||(19574685-19574795)
chr5 (63-134)||(8718023-8718094)
chr5 (99-134)||(34208782-34208817)
chr5 (83-117)||(594328-594362)
chr5 (131-193)||(35355626-35355688)
chr5 (55-111)||(22528023-22528079)
[»] chr3 (36 HSPs)
chr3 (1-134)||(29371684-29371817)
chr3 (1-132)||(18996967-18997098)
chr3 (1-132)||(18999506-18999637)
chr3 (1-133)||(1352142-1352274)
chr3 (1-132)||(32677623-32677754)
chr3 (1-132)||(39528749-39528880)
chr3 (1-132)||(28228436-28228567)
chr3 (1-132)||(41349517-41349648)
chr3 (1-132)||(39807125-39807256)
chr3 (1-134)||(55365906-55366039)
chr3 (1-125)||(29014836-29014960)
chr3 (1-133)||(36737980-36738112)
chr3 (1-129)||(21974152-21974280)
chr3 (1-129)||(21996583-21996711)
chr3 (1-126)||(38855323-38855448)
chr3 (1-129)||(22157261-22157389)
chr3 (1-117)||(39518422-39518538)
chr3 (4-132)||(32839949-32840076)
chr3 (200-314)||(30759501-30759612)
chr3 (19-117)||(49041011-49041107)
chr3 (63-132)||(49319347-49319416)
chr3 (99-136)||(41349367-41349404)
chr3 (99-134)||(39518651-39518686)
chr3 (99-133)||(29014689-29014723)
chr3 (99-133)||(36737833-36737867)
chr3 (99-133)||(38855561-38855595)
chr3 (99-132)||(1351996-1352029)
chr3 (99-132)||(18997211-18997244)
chr3 (99-132)||(18999750-18999783)
chr3 (99-132)||(39528993-39529026)
chr3 (100-132)||(46878980-46879012)
chr3 (20-107)||(837370-837455)
chr3 (99-132)||(29371538-29371571)
chr3 (99-132)||(32677477-32677510)
chr3 (99-132)||(39806979-39807012)
chr3 (26-126)||(34667662-34667762)
[»] chr7 (40 HSPs)
chr7 (1-133)||(29427310-29427442)
chr7 (1-132)||(17904163-17904294)
chr7 (1-132)||(26770179-26770310)
chr7 (1-132)||(46467481-46467612)
chr7 (1-132)||(37179478-37179608)
chr7 (1-132)||(6387838-6387969)
chr7 (1-132)||(6389732-6389863)
chr7 (1-134)||(41922000-41922133)
chr7 (1-124)||(9876271-9876394)
chr7 (1-132)||(29890972-29891103)
chr7 (9-128)||(31503091-31503210)
chr7 (1-134)||(4405107-4405240)
chr7 (23-133)||(19523863-19523975)
chr7 (33-129)||(9332364-9332460)
chr7 (244-381)||(25717358-25717495)
chr7 (19-117)||(33974506-33974604)
chr7 (19-132)||(12252069-12252182)
chr7 (19-133)||(43701550-43701664)
chr7 (19-132)||(29722955-29723068)
chr7 (21-117)||(46689878-46689974)
chr7 (21-112)||(9215631-9215722)
chr7 (19-134)||(31858259-31858373)
chr7 (19-132)||(33379132-33379244)
chr7 (55-117)||(49011058-49011120)
chr7 (19-133)||(33915716-33915828)
chr7 (244-305)||(19049155-19049216)
chr7 (206-259)||(33105960-33106013)
chr7 (210-259)||(49018477-49018526)
chr7 (207-259)||(12936014-12936066)
chr7 (99-133)||(4405353-4405387)
chr7 (99-140)||(17904407-17904449)
chr7 (99-133)||(29890825-29890859)
chr7 (100-134)||(46467333-46467367)
chr7 (99-132)||(29723381-29723414)
chr7 (99-132)||(37179331-37179364)
chr7 (19-74)||(48049057-48049112)
chr7 (100-134)||(26770424-26770458)
chr7 (27-112)||(5514797-5514881)
chr7 (99-132)||(6387692-6387725)
chr7 (209-278)||(23484895-23484963)
[»] scaffold0903 (1 HSPs)
scaffold0903 (200-386)||(5-189)
[»] chr8 (28 HSPs)
chr8 (1-133)||(33837875-33838007)
chr8 (1-132)||(2508942-2509073)
chr8 (1-132)||(28378947-28379078)
chr8 (2-127)||(13469652-13469777)
chr8 (1-132)||(45334422-45334553)
chr8 (1-134)||(25106209-25106342)
chr8 (1-132)||(38495618-38495749)
chr8 (1-133)||(9739984-9740116)
chr8 (9-133)||(27793345-27793469)
chr8 (5-136)||(32183630-32183763)
chr8 (1-88)||(2626384-2626472)
chr8 (63-133)||(27024432-27024502)
chr8 (65-133)||(25978969-25979037)
chr8 (19-133)||(8235161-8235274)
chr8 (196-259)||(6580385-6580447)
chr8 (212-287)||(32574487-32574561)
chr8 (99-135)||(27027655-27027691)
chr8 (70-117)||(2626667-2626714)
chr8 (19-97)||(3203415-3203492)
chr8 (205-259)||(32448452-32448506)
chr8 (99-132)||(25106455-25106488)
chr8 (99-132)||(28379191-28379224)
chr8 (99-132)||(33837729-33837762)
chr8 (99-132)||(45334276-45334309)
chr8 (100-132)||(9740231-9740263)
chr8 (212-279)||(4638755-4638821)
chr8 (100-133)||(13469507-13469540)
chr8 (99-132)||(38495472-38495505)
[»] chr6 (18 HSPs)
chr6 (1-133)||(27312262-27312394)
chr6 (1-133)||(32274433-32274565)
chr6 (1-125)||(5003889-5004013)
chr6 (1-130)||(8504848-8504977)
chr6 (30-134)||(12174698-12174802)
chr6 (4-133)||(29452691-29452821)
chr6 (19-132)||(18741947-18742060)
chr6 (4-132)||(31171139-31171267)
chr6 (43-133)||(7156413-7156503)
chr6 (1-71)||(2543142-2543212)
chr6 (84-132)||(29302500-29302548)
chr6 (212-287)||(1619799-1619873)
chr6 (99-133)||(27312113-27312147)
chr6 (99-132)||(8504733-8504766)
chr6 (99-133)||(2543325-2543359)
chr6 (205-259)||(22822669-22822722)
chr6 (99-132)||(32274678-32274711)
chr6 (100-132)||(18742191-18742223)
[»] chr1 (30 HSPs)
chr1 (5-134)||(4817267-4817396)
chr1 (1-133)||(47669118-47669250)
chr1 (1-132)||(46220259-46220390)
chr1 (1-132)||(10737847-10737978)
chr1 (5-132)||(18126851-18126978)
chr1 (4-132)||(9831503-9831631)
chr1 (1-133)||(4055483-4055615)
chr1 (1-133)||(48564817-48564948)
chr1 (244-490)||(29684214-29684460)
chr1 (1-132)||(3384741-3384870)
chr1 (1-117)||(8889457-8889573)
chr1 (1-131)||(7414208-7414338)
chr1 (30-132)||(1236205-1236307)
chr1 (53-133)||(1749521-1749601)
chr1 (63-132)||(33020206-33020275)
chr1 (1-112)||(39241172-39241283)
chr1 (19-109)||(26842462-26842550)
chr1 (27-133)||(33846830-33846936)
chr1 (27-133)||(33947042-33947148)
chr1 (99-133)||(10737700-10737734)
chr1 (21-75)||(37875849-37875903)
chr1 (99-133)||(46220503-46220537)
chr1 (99-132)||(47669363-47669396)
chr1 (99-131)||(1236071-1236103)
chr1 (101-133)||(48565063-48565095)
chr1 (99-134)||(33023428-33023463)
chr1 (99-129)||(9831747-9831777)
chr1 (99-133)||(37875726-37875760)
chr1 (99-132)||(8889687-8889720)
chr1 (19-117)||(49112441-49112535)
[»] chr2 (15 HSPs)
chr2 (1-137)||(43040995-43041131)
chr2 (1-130)||(15233757-15233886)
chr2 (1-133)||(35793053-35793184)
chr2 (1-133)||(41252414-41252546)
chr2 (1-134)||(31296081-31296214)
chr2 (5-132)||(44104699-44104833)
chr2 (1-132)||(41642891-41643025)
chr2 (1-117)||(31903526-31903641)
chr2 (63-132)||(10118660-10118729)
chr2 (21-117)||(21727684-21727780)
chr2 (99-137)||(10112334-10112372)
chr2 (63-133)||(36963130-36963200)
chr2 (99-132)||(15233999-15234032)
chr2 (99-132)||(43040849-43040882)
chr2 (100-132)||(44104546-44104578)
[»] chr4 (23 HSPs)
chr4 (1-135)||(45590739-45590873)
chr4 (1-136)||(8955922-8956057)
chr4 (1-122)||(34334342-34334463)
chr4 (1-133)||(33288551-33288683)
chr4 (1-126)||(49162108-49162232)
chr4 (40-133)||(30469353-30469446)
chr4 (33-129)||(39481906-39482002)
chr4 (1-132)||(18835705-18835838)
chr4 (4-117)||(50774207-50774325)
chr4 (19-137)||(26025687-26025805)
chr4 (63-133)||(19256185-19256255)
chr4 (82-133)||(36016278-36016329)
chr4 (63-117)||(36968353-36968407)
chr4 (27-117)||(33109073-33109163)
chr4 (210-284)||(35534377-35534450)
chr4 (4-66)||(36971115-36971176)
chr4 (98-132)||(19257103-19257137)
chr4 (205-259)||(29712033-29712089)
chr4 (99-135)||(49162332-49162368)
chr4 (212-259)||(27897503-27897550)
chr4 (99-129)||(8955779-8955809)
chr4 (99-132)||(45590986-45591019)
chr4 (99-131)||(39482106-39482138)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-135)||(44616-44751)
[»] scaffold0075 (2 HSPs)
scaffold0075 (244-337)||(5795-5888)
scaffold0075 (404-444)||(10371-10411)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 205 - 497
Target Start/End: Original strand, 8344566 - 8344872
Alignment:
Q  205 ctactttactatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaattggtaattggagaatgttatattata 304  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8344566 ctactttactatataggacaatctttgtcccttttattgaccattttacccttattaggggtatttcagtaaattggtaattggagaatgttatattata 8344665  T
Q  305 tattcagaaatttttccccttctctctctaaacctcagaannnnnnnnccccttctctttctaaaaaccaatcgt----cctcccctctcactattcacc 400  Q
    ||| ||||||||||||||||||||||||||||||||| ||         |||||||||||||||||||| |||||    || ||||||||||||||||||    
T  8344666 tatacagaaatttttccccttctctctctaaacctcataattttttt--cccttctctttctaaaaacccatcgtccccccccccctctcactattcacc 8344763  T
Q  401 atcttctccaa------------tttcactcaaaattaccaacatgcaaggctacactcatgacttaattgctatctcatacttccagcaagctccattt 488  Q
    |||||||||||            ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  8344764 atcttctccaaatgtttctcccttttcactcaaaattaccaacatgcaaggctacagtcatgacttaattgttatctcatacttccagcaagctccattt 8344863  T
Q  489 tcctcattt 497  Q
    |||||||||    
T  8344864 tcctcattt 8344872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 205 - 499
Target Start/End: Complemental strand, 42825075 - 42824767
Alignment:
Q  205 ctactttactatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaattggtaattggagaatgttatattata 304  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  42825075 ctactttactatataggacaatctttgtcccttttattgaccattttgcccttattaggggtatttcagtaaattggtaattggataatgttatattata 42824976  T
Q  305 tattcagaaatttttccccttctctctctaaacctcagaannnnnnnnccccttctctttctaaaaaccaatcgt----cctcccctctcactattcacc 400  Q
    ||| ||||||||||||||||||||||||||||||||| ||         |||||||||||||||||||| |||||    || ||||||||||||||||||    
T  42824975 tatacagaaatttttccccttctctctctaaacctcataattttttt--cccttctctttctaaaaacccatcgtccccccccccctctcactattcacc 42824878  T
Q  401 atcttctccaa------------tttcactcaaaattaccaacatgcaaggctacactcatgacttaattgctatctcatacttccagcaagctccattt 488  Q
    |||||||||||            ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  42824877 atcttctccaaatgtttctcccttttcactcaaaattaccaacatgcaaggctacagtcatgacttaattgttatctcatacttccagcaagctcaattt 42824778  T
Q  489 tcctcatttct 499  Q
    |||||||||||    
T  42824777 tcctcatttct 42824767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 12399092 - 12399223
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  12399092 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 12399191  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  12399192 aaaacatcaaaagaaaaggaatggagggagta 12399223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34208669 - 34208538
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  34208669 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 34208570  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  34208569 aaaacatcaaaagaaaaggaatggagggagta 34208538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 29875085 - 29874954
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  29875085 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaatatagttgaagttct 29874986  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||| ||||||||||||||    
T  29874985 aaaacatcaaaagaaaaagaatggagggagta 29874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 23090429 - 23090298
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||    
T  23090429 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaatacagttgaagttct 23090330  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  23090329 aaaacatcaaaagaaaaggaatggagggagta 23090298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 4145825 - 4145694
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||    
T  4145825 tactttaatagtttattgtgttttccaacaagggtaaacttaagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttaaagttct 4145726  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||||| |||||    
T  4145725 aaaacatcaaaagaaaaggaatggagcgagta 4145694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4695308 - 4695439
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||    
T  4695308 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgaaatatagttgaagttct 4695407  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||| |||||||||||||||||| ||||||||    
T  4695408 aaaaaatcaaaagaaaaggaatgaagggagta 4695439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3077728 - 3077596
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||| ||||    
T  3077728 tactttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataacaaattcactaaaacatcaaaagttttaaaatatagttgaaattct 3077629  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||| |||||||||||||||    
T  3077628 aaaacatcaaaagaaaatgaatggagggagtat 3077596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42757956 - 42758072
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||    
T  42757956 tactttaatagtttatcgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaaaatagttgaagttct 42758055  T
Q  101 aaaacatcaaaagaaaa 117  Q
    ||||||| |||| ||||    
T  42758056 aaaacataaaaaaaaaa 42758072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 404 - 490
Target Start/End: Original strand, 22913689 - 22913775
Alignment:
Q  404 ttctccaatttcactcaaaattaccaacatgcaaggctacactcatgacttaattgctatctcatacttccagcaagctccattttc 490  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  22913689 ttctccattttcactcaaaattaccaacatgcaaggctacagtcatgacttaactgctatctcatacttccagcaagctccattttc 22913775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 22913478 - 22913568
Alignment:
Q  247 attttgcccttattaggggtattttagtaaattggtaattggagaatgttatattatatattcagaaatttttccccttctctctctaaac 337  Q
    ||||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||||| || ||||||||  ||||||||||||||||    
T  22913478 attttacccttattagggatattttagtaaattagtaattggagaatgttatgttatatatacataaatttttttccttctctctctaaac 22913568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 12096367 - 12096466
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatt-tactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    |||||| ||||||| ||| ||||||||||| |||| |||| | || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  12096367 tgtttttcaacaagagtacacttgagaaaagaatattaaaatatattaaaacatcaaatgttttggaatatagttgaagtcctaaaacatcaaaagaaaa 12096466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 41610625 - 41610694
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||    
T  41610625 ctaaaacatcaaaagttttggaataaagtttaagttctaaaacatcaaaagaaaagaaatggagagagta 41610694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 42793109 - 42793040
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||    
T  42793109 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagtgagta 42793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22646055 - 22646121
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaa 67  Q
    ||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||| ||||||    
T  22646055 tactttaatagtttatggtgtttttcaacaaggttaaacttgagaaaacaataataaattcactaaa 22646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 4434847 - 4434783
Alignment:
Q  65 aaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 129  Q
    |||||||||||  | ||| |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  4434847 aaaacatcaaatatcttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggaggga 4434783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 29875198 - 29875234
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtatat 135  Q
    |||||||||||||||||||||||||||||||||||||    
T  29875198 ctaaaacatcaaaagaaaaggaatggagggagtatat 29875234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 42793562 - 42793598
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtatat 135  Q
    |||||||||||||||||||||||||||||||||||||    
T  42793562 ctaaaacatcaaaagaaaaggaatggagggagtatat 42793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 23090543 - 23090577
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagtata 134  Q
    |||||||||||||||||||||||||||||||||||    
T  23090543 taaaacatcaaaagaaaaggaatggagggagtata 23090577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 12398979 - 12398946
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  12398979 ctaaaacatcaaaagaaaaggaatggagggagta 12398946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 41610405 - 41610372
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||||||||||||||||||||    
T  41610405 taaaacatcaaaagaaaaggaatggagggagtat 41610372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 42757838 - 42757805
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  42757838 ctaaaacatcaaaagaaaaggaatggagggagta 42757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 19574795 - 19574685
Alignment:
Q  21 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaagga 120  Q
    |||| |||||||||| | |||| ||||| |||| ||||| || |||||||| |||  ||||| ||| || ||||||| |||||||||||||||| ||  |    
T  19574795 tttttcaacaagggtgaccttgggaaaa-aatattaaatatattaaaacattaaatattttgaaatttaattgaagtcctaaaacatcaaaagacaa-aa 19574698  T
Q  121 atggagggagtat 133  Q
    |||||||||||||    
T  19574697 atggagggagtat 19574685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 8718094 - 8718023
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtata 134  Q
    |||||||||||||  ||||| |||| ||||||| |  ||||| ||||||||||||| |||||||||| ||||    
T  8718094 ctaaaacatcaaatattttgaaataaagttgaaatcttaaaatatcaaaagaaaagaaatggagggattata 8718023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 34208782 - 34208817
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtata 134  Q
    |||||||||||||| |||||||||||||||||||||    
T  34208782 ctaaaacatcaaaaaaaaaggaatggagggagtata 34208817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 594328 - 594362
Alignment:
Q  83 gaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    |||||||||||||||| ||||||||||||||||||    
T  594328 gaatatagttgaagttttaaaacatcaaaagaaaa 594362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 35355626 - 35355688
Alignment:
Q  131 tatatatcatgttaactatatagaattccttcaaaaatatataaactagtcagagggtgcata 193  Q
    |||||||||||| |||||  |||| ||||||||| || |||||||||| ||||||| ||||||    
T  35355626 tatatatcatgtaaactacttagagttccttcaataaaatataaactattcagaggatgcata 35355688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 22528079 - 22528023
Alignment:
Q  55 taaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaa 111  Q
    ||||| |||||||||||||||  ||||||| |||| ||||||| |||||| ||||||    
T  22528079 taaatgtactaaaacatcaaatattttggagtataattgaagtcctaaaatatcaaa 22528023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 29371684 - 29371817
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29371684 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 29371783  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtata 134  Q
    ||||||||||||||||||||||||||||||||||    
T  29371784 aaaacatcaaaagaaaaggaatggagggagtata 29371817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 18997098 - 18996967
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18997098 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 18996999  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  18996998 aaaacatcaaaagaaaaggaatggagggagta 18996967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 18999637 - 18999506
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18999637 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 18999538  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  18999537 aaaacatcaaaagaaaaggaatggagggagta 18999506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 1352142 - 1352274
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  1352142 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 1352241  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  1352242 aaaacatcaaaagaaaaggaatggagggagtat 1352274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 32677623 - 32677754
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  32677623 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggtatatagttgaagttct 32677722  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  32677723 aaaacatcaaaagaaaaggaatggagggagta 32677754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 39528880 - 39528749
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  39528880 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 39528781  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  39528780 aaaacatcaaaagaaaaggaatggagggagta 39528749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28228567 - 28228436
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28228567 tactttaatagtttattgtattttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 28228468  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||||| |||||    
T  28228467 aaaacatcaaaagaaaaggaatggagagagta 28228436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 41349517 - 41349648
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  41349517 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttagaatatagttgaagttct 41349616  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  41349617 aaaacatcaaaagaaaaggaatggagggagta 41349648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 39807125 - 39807256
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||    
T  39807125 tactttaatagtttattgtgttttccaacgagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgtaatatagttgaagttct 39807224  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||| ||||    
T  39807225 aaaacatcaaaagaaaaggaatggaggaagta 39807256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 55366039 - 55365906
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||||    
T  55366039 tactttaatagtttattgtgttttctaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttgaaatatagttgaagttct 55365940  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtata 134  Q
    ||||||||||||||||||||||| ||||||||||    
T  55365939 aaaacatcaaaagaaaaggaatgaagggagtata 55365906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 29014836 - 29014960
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29014836 tactttaatagtttaatgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 29014935  T
Q  101 aaaacatcaaaagaaaaggaatgga 125  Q
    ||||||| |||| |||| |||||||    
T  29014936 aaaacataaaaaaaaaaagaatgga 29014960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 36737980 - 36738112
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| |||||||    
T  36737980 tactttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttaaaatatagttaaagttct 36738079  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||||||||| | |||||||    
T  36738080 aaaacatcaaaagaaaaggaatgaatggagtat 36738112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 21974280 - 21974152
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    |||||||||| |||||  ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  21974280 tactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaaattct 21974181  T
Q  101 aaaacatcaaaagaaaaggaatggaggga 129  Q
    |||||||||||||||||| ||||||||||    
T  21974180 aaaacatcaaaagaaaagaaatggaggga 21974152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 21996711 - 21996583
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    |||||||||| |||||  ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  21996711 tactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaaattct 21996612  T
Q  101 aaaacatcaaaagaaaaggaatggaggga 129  Q
    |||||||||||||||||| ||||||||||    
T  21996611 aaaacatcaaaagaaaagaaatggaggga 21996583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 38855448 - 38855323
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||  |||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |    
T  38855448 tactttaatagtttatggtgtttttcaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgatgtttt 38855349  T
Q  101 aaaacatcaaaagaaaaggaatggag 126  Q
    ||||||||||||||||||||||||||    
T  38855348 aaaacatcaaaagaaaaggaatggag 38855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 22157389 - 22157261
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    |||||||||| |||||  ||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  22157389 tactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaatatcaaaagttttagaatatagttgaagttct 22157290  T
Q  101 aaaacatcaaaagaaaaggaatggaggga 129  Q
    |||||||||||||||||| ||||||||||    
T  22157289 aaaacatcaaaagaaaagaaatggaggga 22157261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 39518538 - 39518422
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |    
T  39518538 tactttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaatatcaaaagttttgaaatatagttgaagtttt 39518439  T
Q  101 aaaacatcaaaagaaaa 117  Q
    |||||||||||| ||||    
T  39518438 aaaacatcaaaaaaaaa 39518422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 32840076 - 32839949
Alignment:
Q  4 tttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 103  Q
    |||||||||||||| ||||||| |||||||  |||||| |||||| |||||||| || |||||||||||||||  |||  ||||||||||||||||||||    
T  32840076 tttaatagtttattgtgttttctaacaaggacaaacttaagaaaataataataa-ttcactaaaacatcaaaaaatttaaaatatagttgaagttctaaa 32839978  T
Q  104 acatcaaaagaaaaggaatggagggagta 132  Q
    | || ||||||||| ||||||||||||||    
T  32839977 atataaaaagaaaatgaatggagggagta 32839949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 30759501 - 30759612
Alignment:
Q  200 tctacctactttactatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaattggtaattggagaatgttata 299  Q
    |||| ||||||||||||||| |||||| || |||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  30759501 tctatctactttactatataggacaatctt-gtccttttt-ttgaccattttgcccttattaagggtattttagtaaatt-gtaattggataatgttata 30759597  T
Q  300 ttatatattcagaaa 314  Q
    |||||||| ||||||    
T  30759598 ttatatatacagaaa 30759612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 49041011 - 49041107
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    |||||| |||||||||||||| || |||||  ||| ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  49041011 tgtttttcaacaagggtaaacgtgggaaaa--atattaaatatactaaaacatcaaatattttggaacatagttgaagttctaaaacatcaaaagaaaa 49041107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 49319416 - 49319347
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||| |||| ||||  |||| |||||||||||||||||||||||||||||||||| ||||    
T  49319416 ctaaaacatcaaaatttttagaatgaagtttaagttctaaaacatcaaaagaaaaggaatggaggaagta 49319347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 41349404 - 41349367
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtatata 136  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41349404 ctaaaacatcaaaagaaaaggaatggagggagtatata 41349367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 39518651 - 39518686
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtata 134  Q
    ||||||||||||||||||||||||||||||||||||    
T  39518651 ctaaaacatcaaaagaaaaggaatggagggagtata 39518686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 29014723 - 29014689
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||||    
T  29014723 ctaaaacatcaaaagaaaaggaatggagggagtat 29014689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 36737867 - 36737833
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||||    
T  36737867 ctaaaacatcaaaagaaaaggaatggagggagtat 36737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 38855561 - 38855595
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||||    
T  38855561 ctaaaacatcaaaagaaaaggaatggagggagtat 38855595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 1352029 - 1351996
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  1352029 ctaaaacatcaaaagaaaaggaatggagggagta 1351996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 18997211 - 18997244
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  18997211 ctaaaacatcaaaagaaaaggaatggagggagta 18997244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 18999750 - 18999783
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  18999750 ctaaaacatcaaaagaaaaggaatggagggagta 18999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 39528993 - 39529026
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  39528993 ctaaaacatcaaaagaaaaggaatggagggagta 39529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 46878980 - 46879012
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||||||||||||    
T  46878980 taaaacatcaaaagaaaaggaatggagggagta 46879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 837455 - 837370
Alignment:
Q  20 gttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacat 107  Q
    ||||| |||||  ||||||||||| |||| |||| ||| | |||||||| ||||||| |||| |||| ||||||||||||||||||||    
T  837455 gtttttcaacacaggtaaacttgaaaaaa-aatattaattatactaaaatatcaaaa-ttttagaatttagttgaagttctaaaacat 837370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 29371571 - 29371538
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||| ||||||||||||||    
T  29371571 ctaaaacatcaaaagaaaatgaatggagggagta 29371538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 32677510 - 32677477
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||| ||||||||||||||    
T  32677510 ctaaaacatcaaaagaaaatgaatggagggagta 32677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 39807012 - 39806979
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||| ||||||||    
T  39807012 ctaaaacatcaaaagaaaaggaatgaagggagta 39806979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 34667662 - 34667762
Alignment:
Q  26 caacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgga 125  Q
    ||||||||||||| ||||  ||| ||||  |||  | |||||| ||||||  ||||| | || ||||||||| |||||||||||||||||| | ||||||    
T  34667662 caacaagggtaaaattgaataaaaaatatcaaacattctaaaagatcaaatattttgaattaaagttgaagtcctaaaacatcaaaagaaacgaaatgga 34667761  T
Q  126 g 126  Q
    |    
T  34667762 g 34667762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 4e-64; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 29427310 - 29427442
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29427310 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 29427409  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  29427410 aaaacatcaaaagaaaaggaatggagggagtat 29427442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 17904294 - 17904163
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17904294 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 17904195  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  17904194 aaaacatcaaaagaaaaggaatggagggagta 17904163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 26770310 - 26770179
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  26770310 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatttagttgaagttct 26770211  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  26770210 aaaacatcaaaagaaaaggaatggagggagta 26770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 46467481 - 46467612
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46467481 tactttaatagtttattgtgttttccaacaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 46467580  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  46467581 aaaacatcaaaagaaaaggaatggagggagta 46467612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37179478 - 37179608
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37179478 tactttaatagtttattgtgttttccaacaagggtaaactt-agaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 37179576  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  37179577 aaaacatcaaaagaaaaggaatggagggagta 37179608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 6387838 - 6387969
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||    
T  6387838 tactttaatagtttattgtgttttccaacaagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgcagttct 6387937  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  6387938 aaaacatcaaaagaaaaggaatggagggagta 6387969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6389863 - 6389732
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6389863 tactttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 6389764  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||| |||| ||||||||||||||    
T  6389763 aaaacatcaaaacaaaatgaatggagggagta 6389732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 41922000 - 41922133
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  41922000 tactttaatagtttattgtgtttttcaacaagggtaaacttgataaaacaatattaaattcactaaaacatcaaaagttttggaatatagttgaagttct 41922099  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtata 134  Q
    |||||||||||||||||| ||| |||||||||||    
T  41922100 aaaacatcaaaagaaaagaaatagagggagtata 41922133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 9876394 - 9876271
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  9876394 tactttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagtttt 9876295  T
Q  101 aaaacatcaaaagaaaaggaatgg 124  Q
    ||||||||||||||||||||||||    
T  9876294 aaaacatcaaaagaaaaggaatgg 9876271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 29890972 - 29891103
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |    
T  29890972 tactttaatagtttattgtgttttccatcaaggataaacttgagaaaacaatcataaattcactaaaacatcaaaaattttggaatatagttgaagtttt 29891071  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  29891072 aaaacatcaaaagaaaaggaatggagggagta 29891103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 31503091 - 31503210
Alignment:
Q  9 tagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 108  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31503091 tagtttatagtgttttccaacaagggtaaacttaagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 31503190  T
Q  109 aaaagaaaaggaatggaggg 128  Q
    ||||||||||||| ||||||    
T  31503191 aaaagaaaaggaacggaggg 31503210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4405240 - 4405107
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    |||||||||| |||||  ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |    
T  4405240 tactttaataatttatggtgttttccaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaatgttttagaatatagttgaagtttt 4405141  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtata 134  Q
    |||||||||||||||||| |||||||||||||||    
T  4405140 aaaacatcaaaagaaaagaaatggagggagtata 4405107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 19523863 - 19523975
Alignment:
Q  23 ttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatca--aaagaaaagga 120  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||    
T  19523863 ttccaacaagggtaaacttgataaaacaataataaattcactaaaacatcaaaaattttggaatatagttgaagttctaaaacatcaacaaaaaaaagga 19523962  T
Q  121 atggagggagtat 133  Q
    || ||||||||||    
T  19523963 atagagggagtat 19523975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 9332460 - 9332364
Alignment:
Q  33 ggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 129  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  9332460 ggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttgaaatatagttgaagttctaaaacatcaaaagaaaaaaaatggaggga 9332364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 381
Target Start/End: Original strand, 25717358 - 25717495
Alignment:
Q  244 accattttgcccttattaggggtattttagtaaattggtaattggagaatgttatattatatattcagaaatttttccccttctctctctaaacctcaga 343  Q
    |||||||| ||||||||||||||||||||||||||| | ||||| |||||||||| |||||||| || |||||||| ||||||||||||||||| |||||    
T  25717358 accattttacccttattaggggtattttagtaaattagcaattgaagaatgttatgttatatatacataaattttttcccttctctctctaaacttcaga 25717457  T
Q  344 annnnnnnnccccttctctttctaaaaaccaatcgtcc 381  Q
    |        |||||||||||| |||||||| |||||||    
T  25717458 attttttttccccttctctttttaaaaacccatcgtcc 25717495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 33974604 - 33974506
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    |||||| ||||||||||||||||| ||||| |||| ||||| ||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||    
T  33974604 tgtttttcaacaagggtaaacttgggaaaaaaatattaaatatactaaaacataaaatattttggaatatagttgaagttcgaaaacatcaaaagaaaa 33974506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 12252182 - 12252069
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 118  Q
    |||||| |||| || ||||||||| |||||||| | ||||| || || |||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  12252182 tgtttttcaactagagtaaacttgggaaaacaagattaaatatattagaacatcaaatattttggaatatagttgaagttctaaaacatcaaaagaaaaa 12252083  T
Q  119 gaatggagggagta 132  Q
     |||||||||||||    
T  12252082 aaatggagggagta 12252069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 43701664 - 43701550
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 118  Q
    |||||| ||||||||||||| |||   ||| |||| ||||  | |||||||||||||  |||||||||  |||| |||||||||||||||||||||||||    
T  43701664 tgtttttcaacaagggtaaaattggataaaaaatattaaaaattctaaaacatcaaattttttggaatgaagtttaagttctaaaacatcaaaagaaaag 43701565  T
Q  119 gaatggagggagtat 133  Q
    |||||||||||||||    
T  43701564 gaatggagggagtat 43701550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 29723068 - 29722955
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 118  Q
    |||||| ||||||||||||| |||   ||| | |||||||  |  |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  29723068 tgtttttcaacaagggtaaaattggataaaaagtaataaaaattataaaacatcaaaagttttggaataaagtttaagttctaaaatatcaaaagaaaag 29722969  T
Q  119 gaatggagggagta 132  Q
    |||||||| |||||    
T  29722968 gaatggagagagta 29722955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 46689974 - 46689878
Alignment:
Q  21 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    |||| ||| ||||||||||||| ||||| |||| |||   ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  46689974 tttttcaaaaagggtaaacttgggaaaaaaatattaaccatactaaaacatcaagtattttggaatatagttgaagttctaaaacatcaaaagaaaa 46689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 9215631 - 9215722
Alignment:
Q  21 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaa 112  Q
    |||| ||||||||||||| |||| |||| |||| || || ||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  9215631 tttttcaacaagggtaaatttgaaaaaaaaatattacatatactaaaacattaaatattttggaatatagttgaagttctaaaacatcaaaa 9215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 31858259 - 31858373
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 118  Q
    |||||| |||| |||||||| ||| ||||| || | ||||| |||||||||||||||  ||||  ||||||||||||||| ||||||||||||||||||     
T  31858259 tgtttttcaacgagggtaaatttgggaaaaaaa-attaaatatactaaaacatcaaatattttaaaatatagttgaagttgtaaaacatcaaaagaaaaa 31858357  T
Q  119 gaatggagggagtata 134  Q
     |||||||||||||||    
T  31858358 aaatggagggagtata 31858373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 33379132 - 33379244
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 118  Q
    |||||| ||||||||||||| ||| || || |||| ||||  | |||||||||||||  ||||| |||  ||||||||||||||||||||||||||||||    
T  33379132 tgtttttcaacaagggtaaaattg-gataaaaatattaaaaatcctaaaacatcaaatattttgaaatcaagttgaagttctaaaacatcaaaagaaaag 33379230  T
Q  119 gaatggagggagta 132  Q
     |||||||||||||    
T  33379231 aaatggagggagta 33379244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 49011058 - 49011120
Alignment:
Q  55 taaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  49011058 taaatatactaaaacatcaaatgttttgaaatatagttgaagtcctaaaacatcaaaagaaaa 49011120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 33915828 - 33915716
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 118  Q
    |||||| |||||||| |||||||| ||||| || | ||||| |||||||||||||||  ||||| ||||||||| || ||| |||||| ||||||||||     
T  33915828 tgtttttcaacaagg-taaacttgggaaaaaaaaattaaatatactaaaacatcaaatattttgaaatatagttaaaattcaaaaacaacaaaagaaaa- 33915731  T
Q  119 gaatggagggagtat 133  Q
     ||||||||||||||    
T  33915730 aaatggagggagtat 33915716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 19049155 - 19049216
Alignment:
Q  244 accattttgcccttattaggggtattttagtaaattggtaattggagaatgttatattatat 305  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||| |||||| ||||||    
T  19049155 accattttgcccttattaggggtattttagtaaattacaaattggagagtgttatgttatat 19049216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 33106013 - 33105960
Alignment:
Q  206 tactttactatataagacaatttttgtcccttttattgaccattttgcccttat 259  Q
    ||||| |||||||| |||||| |||||||||||| |||||||||||||||||||    
T  33106013 tacttaactatataggacaatctttgtcccttttgttgaccattttgcccttat 33105960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 49018477 - 49018526
Alignment:
Q  210 ttactatataagacaatttttgtcccttttattgaccattttgcccttat 259  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  49018477 ttactatataggacaatctttgtccctttttttgaccattttgcccttat 49018526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 12936014 - 12936066
Alignment:
Q  207 actttactatataagacaatttttgtcccttttattgaccattttgcccttat 259  Q
    |||| |||||||| |||||| |||||||||||| |||||||||||||||||||    
T  12936014 acttaactatataggacaatctttgtccctttttttgaccattttgcccttat 12936066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 4405353 - 4405387
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||||    
T  4405353 ctaaaacatcaaaagaaaaggaatggagggagtat 4405387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 17904407 - 17904449
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta-tatatcat 140  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  17904407 ctaaaacatcaaaagaaaaggaatggagggagtagtatatcat 17904449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 29890859 - 29890825
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||||    
T  29890859 ctaaaacatcaaaagaaaaggaatggagggagtat 29890825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 46467367 - 46467333
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagtata 134  Q
    |||||||||||||||||||||||||||||||||||    
T  46467367 taaaacatcaaaagaaaaggaatggagggagtata 46467333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 29723381 - 29723414
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  29723381 ctaaaacatcaaaagaaaaggaatggagggagta 29723414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 37179364 - 37179331
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  37179364 ctaaaacatcaaaagaaaaggaatggagggagta 37179331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 48049112 - 48049057
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaa 74  Q
    |||||| ||||| ||||||||||| ||||| |||| ||||| ||||||||||||||    
T  48049112 tgtttttcaacaggggtaaacttgggaaaaaaatattaaatatactaaaacatcaa 48049057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 26770424 - 26770458
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagtata 134  Q
    |||||||||||||||||| ||||||||||||||||    
T  26770424 taaaacatcaaaagaaaatgaatggagggagtata 26770458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 5514881 - 5514797
Alignment:
Q  27 aacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaa 112  Q
    ||||||||||||||||| || | |||| ||||| |||||||  ||||||  |||| ||||||| || |||||||||||||| ||||    
T  5514881 aacaagggtaaacttgaaaata-aatattaaatatactaaataatcaaatattttagaatatatttaaagttctaaaacattaaaa 5514797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 6387725 - 6387692
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||| ||||    
T  6387725 ctaaaacatcaaaagaaaaggaatggaggaagta 6387692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 23484963 - 23484895
Alignment:
Q  209 tttactatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaat 278  Q
    ||||||||||| |||||| ||||||| |||| |||||||||||  ||||| || ||||||||| ||||||    
T  23484963 tttactatataggacaatctttgtccttttt-ttgaccattttaaccttagtaagggtattttggtaaat 23484895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0903 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: scaffold0903
Description:

Target: scaffold0903; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 200 - 386
Target Start/End: Complemental strand, 189 - 5
Alignment:
Q  200 tctacctactttactatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaattggtaattggagaatgttata 299  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  189 tctatctactttactatataggacaatctttgtcccttttattgaccattttgcccttattaggggtatttcagtaaattggtaattggagaatgttata 90  T
Q  300 ttatatattcagaaatttttccccttctctctctaaacctcagaannnnnnnnccccttctctttctaaaaaccaatcgtcctcccc 386  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||         |||||||||||||||||||| ||||||| ||||    
T  89 ttatatatacagaaatttttccccttctctctctaaacctcataattttttt--cccttctctttctaaaaacccatcgtccccccc 5  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 9e-62; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 33837875 - 33838007
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  33837875 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 33837974  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  33837975 aaaacatcaaaagaaaaggaatggagggagtat 33838007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2508942 - 2509073
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  2508942 tactttaatagtttactgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 2509041  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  2509042 aaaacatcaaaagaaaaggaatggagggagta 2509073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28379078 - 28378947
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28379078 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 28378979  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||  |||||||||||||    
T  28378978 aaaacatcaaaagaaaaataatggagggagta 28378947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 13469652 - 13469777
Alignment:
Q  2 actttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13469652 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaattataaatttactaaaatatcaaaagttttggaatatagttgaagttcta 13469751  T
Q  102 aaacatcaaaagaaaaggaatggagg 127  Q
    ||||||||||||||||||||||||||    
T  13469752 aaacatcaaaagaaaaggaatggagg 13469777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 45334422 - 45334553
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||    
T  45334422 tactttaatagtttattgtgttttccaacaagggtaaacttgaaaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttaaagttct 45334521  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  45334522 aaaacatcaaaagaaaaggaatggagggagta 45334553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 25106342 - 25106209
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  25106342 tactttaatagtttattgtgttttccatcaagggtaaacttgaaaaaacaatcataaattcactaaaacatcaaaaattttggaatatagttgaagttct 25106243  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtata 134  Q
    |||||||||||||||||||||||||| |||||||    
T  25106242 aaaacatcaaaagaaaaggaatggagagagtata 25106209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38495618 - 38495749
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||    
T  38495618 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcaccaaaacatcaaaaattttagaatatagttgaagttct 38495717  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||| ||||||| ||||||||| ||||    
T  38495718 aaaacatcacaagaaaaagaatggaggaagta 38495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9740116 - 9739984
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||  |||||||||    
T  9740116 tactttaatagtttattgtgtttttcaacaaggataaacttgagaaagcaataataaattcagtaaaacatcaaaagttttgaaatatacatgaagttct 9740017  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  9740016 aaaacatcaaaagaaaaggaatggagggagtat 9739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 27793345 - 27793469
Alignment:
Q  9 tagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 108  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||    
T  27793345 tagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacattaaaagttttggaatatagttgaagatctaaaacatc 27793444  T
Q  109 aaaagaaaaggaatggagggagtat 133  Q
    ||||||||| ||||||| |||||||    
T  27793445 aaaagaaaatgaatggaaggagtat 27793469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 32183630 - 32183763
Alignment:
Q  5 ttaatagtttat--tatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaa 102  Q
    ||||||||||||  | |||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||  |||||||||||||||||||||||||    
T  32183630 ttaatagtttatggtgtgttttccaacaagggtaaacttgggaaaaaaatattaaatatactaaaacatcaaatattttggaatatagttgaagttctaa 32183729  T
Q  103 aacatcaaaagaaaaggaatggagggagtatata 136  Q
    |||||||||||||||  |||| ||||||||||||    
T  32183730 aacatcaaaagaaaaaaaatgaagggagtatata 32183763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2626384 - 2626472
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaac-aataataaatttactaaaacatcaaaagttttggaatat 88  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  2626384 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaaataataaattcactaaaacatcaaaagttttggaatat 2626472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 27024502 - 27024432
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  27024502 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagggagtat 27024432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 25978969 - 25979037
Alignment:
Q  65 aaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||| |||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  25978969 aaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggagggagtat 25979037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 8235274 - 8235161
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 118  Q
    |||||| ||||||||||||| ||||  ||| |||| ||||  |  |||||||||||| |||||| |||| | ||||||| |||||||||||||||||||     
T  8235274 tgtttttcaacaagggtaaaattgaagaaa-aatattaaaaatcttaaaacatcaaatgttttgaaataaaattgaagtcctaaaacatcaaaagaaaat 8235176  T
Q  119 gaatggagggagtat 133  Q
     ||||||||||||||    
T  8235175 aaatggagggagtat 8235161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 6580447 - 6580385
Alignment:
Q  196 aacttctacctactttactatataagacaatttttgtcccttttattgaccattttgcccttat 259  Q
    |||||||| ||||||||||||||| |||||| |||||||||||| || ||||||||||||||||    
T  6580447 aacttctatctactttactatataggacaatctttgtccctttt-tttaccattttgcccttat 6580385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 32574561 - 32574487
Alignment:
Q  212 actatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaattggtaattg 287  Q
    |||||||| ||||||| |||||| |||| || ||||||||||||||| |||||||||||| ||||||| |||||||    
T  32574561 actatataggacaattcttgtccattttttttaccattttgccctta-taggggtattttggtaaattagtaattg 32574487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 27027655 - 27027691
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtatat 135  Q
    |||||||||||||||||||||||||||||||||||||    
T  27027655 ctaaaacatcaaaagaaaaggaatggagggagtatat 27027691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 2626667 - 2626714
Alignment:
Q  70 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||    
T  2626667 atcaaaagttttggaatatagttgaagttctaaaatataaaaaaaaaa 2626714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 3203415 - 3203492
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagt 97  Q
    |||||| |||||| | |||||||||||||| |||| ||||| |||||||||||||||  ||||  ||||||||||||||    
T  3203415 tgtttttcaacaaagataaacttgagaaaa-aatattaaatatactaaaacatcaaatattttaaaatatagttgaagt 3203492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 32448506 - 32448452
Alignment:
Q  205 ctactttactatataagacaatttttgtcccttttattgaccattttgcccttat 259  Q
    ||||| |||||| || |||||| |||||||||||| |||||||||||||||||||    
T  32448506 ctactatactatgtaggacaatctttgtccctttttttgaccattttgcccttat 32448452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 25106455 - 25106488
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  25106455 ctaaaacatcaaaagaaaaggaatggagggagta 25106488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 28379191 - 28379224
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  28379191 ctaaaacatcaaaagaaaaggaatggagggagta 28379224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 33837762 - 33837729
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  33837762 ctaaaacatcaaaagaaaaggaatggagggagta 33837729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 45334309 - 45334276
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  45334309 ctaaaacatcaaaagaaaaggaatggagggagta 45334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 9740231 - 9740263
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||||||||||||    
T  9740231 taaaacatcaaaagaaaaggaatggagggagta 9740263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 4638821 - 4638755
Alignment:
Q  212 actatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaatt 279  Q
    |||||||| |||||||||||||||| || || || |||||||||||| |||||||||||  |||||||    
T  4638821 actatataggacaatttttgtccctgttttttacaattttgccctta-taggggtatttaggtaaatt 4638755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 13469540 - 13469507
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||| |||||||    
T  13469540 taaaacatcaaaagaaaaggaatggaaggagtat 13469507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 38495505 - 38495472
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||| ||||||||||||||    
T  38495505 ctaaaacatcaaaagaaaatgaatggagggagta 38495472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 27312262 - 27312394
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  27312262 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaatatagttgaagttct 27312361  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  27312362 aaaacatcaaaagaaaaggaatggagggagtat 27312394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 32274565 - 32274433
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  32274565 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 32274466  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  32274465 aaaacatcaaaagaaaaggaatggagggagtat 32274433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 5004013 - 5003889
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  5004013 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaatatagttgaagttct 5003914  T
Q  101 aaaacatcaaaagaaaaggaatgga 125  Q
    |||||||||||| |||| |||||||    
T  5003913 aaaacatcaaaaaaaaatgaatgga 5003889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 8504848 - 8504977
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  8504848 tactttaatagtttattgtgtttttcaacaagggtaaacctgagaaaataataataaattcactaaaacatcaaaagttttgaaatatagttgaagttct 8504947  T
Q  101 aaaacatcaaaagaaaaggaatggagggag 130  Q
    ||||||||||||||||| ||||||||||||    
T  8504948 aaaacatcaaaagaaaatgaatggagggag 8504977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 12174802 - 12174698
Alignment:
Q  30 aagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 129  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  12174802 aagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatatttaaagttctaaaacattaaaagaaaaggaatggaggga 12174703  T
Q  130 gtata 134  Q
    |||||    
T  12174702 gtata 12174698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29452691 - 29452821
Alignment:
Q  4 tttaatagtttattatgttttccaacaagggtaaacttgagaaaacaa-taataaatttactaaaacatcaaaagttttggaatatagttgaagttctaa 102  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |  ||| ||||||||||||||||||||    
T  29452691 tttaatagtttatggtgttttccaacaagtgtaaacttgagaaaacaagtaataaattcactaaaacatcaagaaatttagaatatagttgaagttctaa 29452790  T
Q  103 aacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||| |||||||| ||||||||||||||    
T  29452791 aacatcagaagaaaagaaatggagggagtat 29452821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 18742060 - 18741947
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 118  Q
    |||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  18742060 tgtttttcaacaagggtaaatttgagaatacaatattaaatatactaaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaag 18741961  T
Q  119 gaatggagggagta 132  Q
     |||||||||||||    
T  18741960 aaatggagggagta 18741947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 31171139 - 31171267
Alignment:
Q  4 tttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 103  Q
    ||||||||||||   |||||||||| || | |||||||||||||||||||||||||| |||| |||||| || ||||||||||| | ||||| |||||||    
T  31171139 tttaatagtttaaggtgttttccaataaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatacatttgaatttctaaa 31171238  T
Q  104 acatcaaaagaaaaggaatggagggagta 132  Q
     |||||||||||||| |||||||||||||    
T  31171239 tcatcaaaagaaaagaaatggagggagta 31171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 7156413 - 7156503
Alignment:
Q  43 agaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  7156413 agaaaacaataataaattcactaaaacatctaaagttttggaatatagttgattgtctaaaacatcaaaagaaaagaaatggagggagtat 7156503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2543212 - 2543142
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacat 71  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2543212 tactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacat 2543142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 29302500 - 29302548
Alignment:
Q  84 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302500 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 29302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 1619873 - 1619799
Alignment:
Q  212 actatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaattggtaattg 287  Q
    |||||||| ||||||| |||||| |||| || ||||||||||||||| |||||||||||| ||||||| |||||||    
T  1619873 actatataggacaattcttgtccattttttttaccattttgccctta-taggggtattttggtaaattagtaattg 1619799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 27312147 - 27312113
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||||    
T  27312147 ctaaaacatcaaaagaaaaggaatggagggagtat 27312113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 8504766 - 8504733
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  8504766 ctaaaacatcaaaagaaaaggaatggagggagta 8504733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 2543325 - 2543359
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||||| |||||||||||||||    
T  2543325 ctaaaacatcaaaagaaaacgaatggagggagtat 2543359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 22822722 - 22822669
Alignment:
Q  205 ctactttactatataagacaatttttgtcccttttattgaccattttgcccttat 259  Q
    ||||| ||||||||| |||||||||||||| |||| || ||||||||||||||||    
T  22822722 ctactatactatataggacaatttttgtccatttt-tttaccattttgcccttat 22822669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 32274678 - 32274711
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||| ||||||||||||||    
T  32274678 ctaaaacatcaaaagaaaatgaatggagggagta 32274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 18742191 - 18742223
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||| |||||||||||||    
T  18742191 taaaacatcaaaagaaaagaaatggagggagta 18742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 4817396 - 4817267
Alignment:
Q  5 ttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaa 104  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4817396 ttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaatgataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaa 4817297  T
Q  105 catcaaaagaaaaggaatggagggagtata 134  Q
    ||||||||||||||||||||||||||||||    
T  4817296 catcaaaagaaaaggaatggagggagtata 4817267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 47669250 - 47669118
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||    
T  47669250 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaatatagttgaagttct 47669151  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  47669150 aaaacatcaaaagaaaaggaatggagggagtat 47669118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 46220390 - 46220259
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  46220390 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 46220291  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||| |||||||||    
T  46220290 aaaacatcaaaagaaaaggaatagagggagta 46220259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 10737847 - 10737978
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  10737847 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttct 10737946  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||| ||||||||||||||| ||||||||    
T  10737947 aaaacattaaaagaaaaggaatgaagggagta 10737978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 18126978 - 18126851
Alignment:
Q  5 ttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaa 104  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  18126978 ttaatagtttgttgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttctaaaa 18126879  T
Q  105 catcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||    
T  18126878 catcaaaagaaaaggaatggagggagta 18126851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 9831631 - 9831503
Alignment:
Q  4 tttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 103  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  9831631 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaataataacaaattcactaaaacatcaaaagttttggaatatagttgaaattctaaa 9831532  T
Q  104 acatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||||||||    
T  9831531 acatcaaaagaaaaggaatggagggagta 9831503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 4055615 - 4055483
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    |||||||| |||  ||| |||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  4055615 tactttaacagtgaattgtgttttccaataagggtaaacttgagaaaacaataattaattcactaaaacatcaaaagttttggaatatagttgaagttct 4055516  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  4055515 aaaacatcaaaagaaaaggaatggagggagtat 4055483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 48564948 - 48564817
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |    
T  48564948 tactttaatagtttattgtgttttccatcaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaatttttggaatatagttgaagtttt 48564849  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||| ||||||||| ||||||||||||||    
T  48564848 aaaacatc-aaagaaaagtaatggagggagtat 48564817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 244 - 490
Target Start/End: Original strand, 29684214 - 29684460
Alignment:
Q  244 accattttgcccttattaggggtattttagtaaattggtaattggagaatgttatattatatattcagaaatttttccccttctctctctaaacctcaga 343  Q
    |||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||    
T  29684214 accattttacccttattaagggtattttagtaaattagtaattggagaatgttatcttatatatacagaatttttttcccttctctctctaaacttcaga 29684313  T
Q  344 annnnnnnnccccttctctttctaaaaaccaatcgtcctcccctctcactattcaccatcttctccaa------------tttcactcaaaattaccaac 431  Q
    |         |||||||||||||||||          | |||||||||||||||| ||||||||||||            ||||||||||||||||||||    
T  29684314 attttttt--cccttctctttctaaaa----------cccccctctcactattcatcatcttctccaaatctttctcccttttcactcaaaattaccaac 29684401  T
Q  432 atgcaaggctacactcatgacttaattgctatctcatacttccagcaagctccattttc 490  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  29684402 atgcaaagctacagtcatgacttaattgctatctcatacttccaggaagctccattttc 29684460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3384741 - 3384870
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  | |||||||| |||||    
T  3384741 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttg--aaatagttgaggttct 3384838  T
Q  101 aaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||| ||||| ||||||||    
T  3384839 aaaacatcaaaagaaaaagaatgaagggagta 3384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 8889573 - 8889457
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8889573 tactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttct 8889474  T
Q  101 aaaacatcaaaagaaaa 117  Q
    ||||||| |||| ||||    
T  8889473 aaaacataaaaaaaaaa 8889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 7414338 - 7414208
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||  |||||||||||||||||    
T  7414338 tactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttaaaatatagttgaagttct 7414239  T
Q  101 aaaacatcaaaagaaaaggaatggagggagt 131  Q
    |||||||||||| |||| |||||||||||||    
T  7414238 aaaacatcaaaaaaaaatgaatggagggagt 7414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 1236205 - 1236307
Alignment:
Q  30 aagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 129  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  1236205 aagggtaaacttgagaaaacaataataaattcactaaaccatcaaaagttttggaatatagttaaagttctaaaacatcaaaagaaaatgaatggaggga 1236304  T
Q  130 gta 132  Q
    |||    
T  1236305 gta 1236307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 1749521 - 1749601
Alignment:
Q  53 aataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||| |||||    
T  1749521 aataaattcactaaaacatcaaaagttttggtatataattaaagttctaaaacatcaaaagaaaaggaatagaggaagtat 1749601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 33020275 - 33020206
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||    
T  33020275 ctaaaacatcaaaagttttggaaaaaagtttaagctctaaaacatcaaaagaaaaggaatggagggagta 33020206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 39241283 - 39241172
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaa-cttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttc 99  Q
    ||||||||||||||||  |||||| ||||||| ||||| ||||| | |||||||||||||| ||| ||||| ||||||||||| |||||||||||| |||    
T  39241283 tactttaatagtttatggtgtttttcaacaagagtaaaacttgatacaacaataataaattcactgaaacaacaaaagttttgaaatatagttgaa-ttc 39241185  T
Q  100 taaaacatcaaaa 112  Q
    |||||||| ||||    
T  39241184 taaaacattaaaa 39241172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 26842550 - 26842462
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatca 109  Q
    |||||| |||||||| ||||||||| ||||  ||| ||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  26842550 tgtttttcaacaaggataaacttgaaaaaa--atattaaatatactaaaacatcaaatattttgaaatatagttgaagttctaaaacatca 26842462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 33846830 - 33846936
Alignment:
Q  27 aacaagggtaaacttgagaaaacaataat-aaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgga 125  Q
    |||||||||||||||||| ||| || ||| |||| |||| ||||||||||  ||||  |||| | |||||||  ||||||||||||||||||  ||||||    
T  33846830 aacaagggtaaacttgaggaaaaaaaaattaaatatactgaaacatcaaatattttaaaatacacttgaagtcttaaaacatcaaaagaaaa-aaatgga 33846928  T
Q  126 gggagtat 133  Q
    ||||||||    
T  33846929 gggagtat 33846936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 33947148 - 33947042
Alignment:
Q  27 aacaagggtaaacttgagaaaacaataat-aaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgga 125  Q
    |||||||||||||||||| ||| || ||| |||| |||| ||||||||||  ||||  |||| | |||||||  ||||||||||||||||||  ||||||    
T  33947148 aacaagggtaaacttgaggaaaaaaaaattaaatatactgaaacatcaaatattttaaaatacacttgaagtcttaaaacatcaaaagaaaa-aaatgga 33947050  T
Q  126 gggagtat 133  Q
    ||||||||    
T  33947049 gggagtat 33947042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 10737734 - 10737700
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||||    
T  10737734 ctaaaacatcaaaagaaaaggaatggagggagtat 10737700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 37875903 - 37875849
Alignment:
Q  21 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaa 75  Q
    |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||||    
T  37875903 tttttcaacaaggataaacttgagaaaacaacattaaatatactaaaacatcaaa 37875849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 46220503 - 46220537
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||||    
T  46220503 ctaaaacatcaaaagaaaaggaatggagggagtat 46220537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 47669363 - 47669396
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  47669363 ctaaaacatcaaaagaaaaggaatggagggagta 47669396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 1236103 - 1236071
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagt 131  Q
    |||||||||||||||||||||||||||||||||    
T  1236103 ctaaaacatcaaaagaaaaggaatggagggagt 1236071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 48565063 - 48565095
Alignment:
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  48565063 aaaacatcaaaagaaaaggaatggagggagtat 48565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 33023428 - 33023463
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtata 134  Q
    ||||||| ||||||||||||||||||||||||||||    
T  33023428 ctaaaacgtcaaaagaaaaggaatggagggagtata 33023463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 9831747 - 9831777
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggaggga 129  Q
    |||||||||||||||||||||||||||||||    
T  9831747 ctaaaacatcaaaagaaaaggaatggaggga 9831777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 37875760 - 37875726
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  37875760 ctaaaacatcaaaagaaaagaaatggagggagtat 37875726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 8889687 - 8889720
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||| |||||||||||||||||||    
T  8889687 ctaaaacatcaaaataaaaggaatggagggagta 8889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 49112441 - 49112535
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    |||||| ||||||||||||| ||   ||||||||  ||||| |||||||||||||||  ||||  ||||||||| |||||    |||||||||||||||    
T  49112441 tgtttttcaacaagggtaaatttagaaaaacaatgttaaatatactaaaacatcaaatattttaaaatatagttaaagtt----aacatcaaaagaaaa 49112535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 43040995 - 43041131
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  43040995 tactttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagtttt 43041094  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtatatat 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  43041095 aaaacatcaaaagaaaaggaatggagggagtatatat 43041131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 15233886 - 15233757
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  15233886 tactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttct 15233787  T
Q  101 aaaacatcaaaagaaaaggaatggagggag 130  Q
    |||||||||||||||||||||| |||||||    
T  15233786 aaaacatcaaaagaaaaggaatagagggag 15233757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 35793053 - 35793184
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  35793053 tactttaatagtttattgtgttttccaacaagggtaaacttga-aaaacaataataaattctctaaaacatcaaaagttttggaatatagttgaagttct 35793151  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||| |||||||||||||||    
T  35793152 aaaacatcaaaagaaaaagaatggagggagtat 35793184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 41252546 - 41252414
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  41252546 tactttaatagtttattgtattttccaacaaggataaacttgagaacacaataataaattcactaaaacatcaaaagttttggaatatatttgaagttct 41252447  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||| |||||||||||||||||||||||||    
T  41252446 aaaacataaaaagaaaaggaatggagggagtat 41252414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 31296214 - 31296081
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  31296214 tactttaatagtttattgtgtttttcaacaaaggtaaatttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttct 31296115  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtata 134  Q
    ||||||||||||||||| ||||||| ||||||||    
T  31296114 aaaacatcaaaagaaaaagaatggaaggagtata 31296081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 44104699 - 44104833
Alignment:
Q  5 ttaatagtttattatgttttccaacaa-------gggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagt 97  Q
    ||||||||||||| |||||||||||||       ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  44104699 ttaatagtttattgtgttttccaacaatttataagggtaaacttgagaaaataataataaattcactaaaacatcaaaagttttgaaatatagttgaagt 44104798  T
Q  98 tctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||| ||||||||||    
T  44104799 tctaaaacatcaaaagaaaaggaacggagggagta 44104833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41643025 - 41642891
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaa--tatagttgaagtt 98  Q
    ||||||||||||||||  |||||||||  || |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||    
T  41643025 tactttaatagtttatggtgttttccagaaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatatagttgaaatt 41642926  T
Q  99 ct-aaaacatcaaaagaaaaggaatggagggagta 132  Q
    || |||||||||||||||||| |||||||||||||    
T  41642925 ctaaaaacatcaaaagaaaagaaatggagggagta 41642891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 31903526 - 31903641
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||  |||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  31903526 tactttaatagtttatggtgttttccaataagggtaaact-gataaaacaataataaatttactaaaacatcaaaaaatttggaatatatttgaagttct 31903624  T
Q  101 aaaacatcaaaagaaaa 117  Q
    |||||||||||| ||||    
T  31903625 aaaacatcaaaaaaaaa 31903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 10118660 - 10118729
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||    
T  10118660 ctaaaacatcaaaagttttggaataaagtttaagctctaaaatatcaaaagaaaaggaatggagggagta 10118729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 21727780 - 21727684
Alignment:
Q  21 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    |||| ||||||||||||| ||| | ||| |||| ||  | ||| |||||||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  21727780 tttttcaacaagggtaaatttggggaaaaaatattagttataccaaaacatcaaatattttgaaatatagttgaagttctaaaacatcaaaagaaaa 21727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 10112372 - 10112334
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtatatat 137  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10112372 ctaaaacatcaaaagaaaaggaatggagggagtatatat 10112334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 36963200 - 36963130
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||||||||||||  ||||| |||| |||| || ||||||||||| |||||||||||||| ||| ||||||    
T  36963200 ctaaaacatcaaattttttgaaataaagtttaaattctaaaacattaaaagaaaaggaatagagcgagtat 36963130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 15233999 - 15234032
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  15233999 ctaaaacatcaaaagaaaaggaatggagggagta 15234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 43040882 - 43040849
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||||||||||||||||||    
T  43040882 ctaaaacatcaaaagaaaaggaatggagggagta 43040849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 44104578 - 44104546
Alignment:
Q  100 taaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||||||||||||    
T  44104578 taaaacatcaaaagaaaaggaatggagggagta 44104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 45590873 - 45590739
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  45590873 tactttaatagtttattgtgttttccaacaaaggtaaacttgataaaacaataatgaattcactaaaacatcaaaagttttagaatatagttgaagttct 45590774  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtatat 135  Q
    ||||||||||||||||| |||||||||||||||||    
T  45590773 aaaacatcaaaagaaaatgaatggagggagtatat 45590739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 8955922 - 8956057
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    |||||||||| |||||| |||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||    
T  8955922 tactttaataatttattgtgttttccaataagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttgtaatatagttgaagttct 8956021  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtatata 136  Q
    |||||||||||| |||||||||||||||||||||||    
T  8956022 aaaacatcaaaaaaaaaggaatggagggagtatata 8956057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 34334463 - 34334342
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  34334463 tactttaatagtttattgtgtttttcaacaagggtaaacttgagaagacaataataaattcactaaagcatcaaaagttttggaatatagttgaagttct 34334364  T
Q  101 aaaacatcaaaagaaaaggaat 122  Q
    ||||||||||||||||||||||    
T  34334363 aaaacatcaaaagaaaaggaat 34334342  T

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Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 33288551 - 33288683
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    |||||||  ||| |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  33288551 tactttatcagtatattgtgttttccaacatgggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatataattgaagttct 33288650  T
Q  101 aaaacatcaaaagaaaaggaatggagggagtat 133  Q
    |||| ||||||||||||| ||||||||||||||    
T  33288651 aaaatatcaaaagaaaagaaatggagggagtat 33288683  T

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Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 49162232 - 49162108
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  49162232 tactttaatagtttatggtgttttccaacaagg-taaaattgagaaaacaataataaattcactaaaacatcaaaaattttggaatatagttgaagttct 49162134  T
Q  101 aaaacatcaaaagaaaaggaatggag 126  Q
     |||||||||||||||| ||||||||    
T  49162133 gaaacatcaaaagaaaatgaatggag 49162108  T

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Target: chr4; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 30469353 - 30469446
Alignment:
Q  40 ttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30469353 ttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgaagggagtat 30469446  T

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Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 39482002 - 39481906
Alignment:
Q  33 ggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 129  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  39482002 ggtaaacctgagaaaacaataataaatttactaaaacatcaaaagttttggaaaatagttgaagttctaaaacatcaaaagaaaagaaatggaggga 39481906  T

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Target: chr4; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 18835838 - 18835705
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaattt--actaaaacatcaaaagttttggaatatagttgaagtt 98  Q
    |||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||| || |  ||||||||||| |||||||||||||||||||||||||    
T  18835838 tactttaatagtttatgatgttttctaacaaggataaatttgagaaaacaataatatatattcactaaaacatcgaaagttttggaatatagttgaagtt 18835739  T
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||  |||| ||||||||    
T  18835738 ctaaaacatcaaaagaaaataaatgaagggagta 18835705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 50774207 - 50774325
Alignment:
Q  4 tttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaa-----catcaaaagttttggaatatagttgaagtt 98  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||      ||||||||||||| ||||||||| |||||    
T  50774207 tttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaatactgtatcaaaagttttgaaatatagttaaagtt 50774306  T
Q  99 ctaaaacatcaaaagaaaa 117  Q
    |||||||||||||| ||||    
T  50774307 ctaaaacatcaaaaaaaaa 50774325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 26025687 - 26025805
Alignment:
Q  19 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaag-aaaa 117  Q
    |||||| ||||||||||||||||| ||||| |||| ||||| ||||||||  |||||  |||||||||||||||||||| ||||||||||||||| ||||    
T  26025687 tgtttttcaacaagggtaaacttgggaaaa-aatattaaatatactaaaatgtcaaatattttggaatatagttgaagtcctaaaacatcaaaagaaaaa 26025785  T
Q  118 ggaatggagggagtatatat 137  Q
      ||||||||||||||||||    
T  26025786 aaaatggagggagtatatat 26025805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 19256255 - 19256185
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  19256255 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagggagtat 19256185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 36016329 - 36016278
Alignment:
Q  82 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016329 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 36016278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 36968407 - 36968353
Alignment:
Q  63 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36968407 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaaaaaaa 36968353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 33109073 - 33109163
Alignment:
Q  27 aacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 117  Q
    ||||||| ||||||| |||||| |||| ||||| ||||||||||||||   ||||  |||||||||||||| ||||||||| |||||||||    
T  33109073 aacaaggataaacttaagaaaaaaatattaaatatactaaaacatcaattattttaaaatatagttgaagtcctaaaacattaaaagaaaa 33109163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 35534377 - 35534450
Alignment:
Q  210 ttactatataagacaatttttgtcccttttattgaccattttgcccttattaggggtattttagtaaattggtaa 284  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  35534377 ttactatataggacaattcttgtccctttttttgaccattttgccttta-taggggtattttggtaaattagtaa 35534450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 36971176 - 36971115
Alignment:
Q  4 tttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaa 66  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  36971176 tttaatagtttattgtgttttccaacaagg-taaacttcagaaaacaataataaattcactaa 36971115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 19257103 - 19257137
Alignment:
Q  98 tctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    |||||||||||||||||||||||||||||||||||    
T  19257103 tctaaaacatcaaaagaaaaggaatggagggagta 19257137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 29712089 - 29712033
Alignment:
Q  205 ctactttactatataagacaatttttgtccc--ttttattgaccattttgcccttat 259  Q
    ||||||||||||||| |||||| ||||||||  |||| |||||||||||||||||||    
T  29712089 ctactttactatataggacaatctttgtccctttttttttgaccattttgcccttat 29712033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 49162332 - 49162368
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagtatat 135  Q
    |||||||||||||||||| ||||||||||||||||||    
T  49162332 ctaaaacatcaaaagaaagggaatggagggagtatat 49162368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 27897550 - 27897503
Alignment:
Q  212 actatataagacaatttttgtcccttttattgaccattttgcccttat 259  Q
    |||||||| |||||| |||||||||||| | |||||||||||||||||    
T  27897550 actatataggacaatctttgtcccttttttggaccattttgcccttat 27897503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 8955809 - 8955779
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggaggga 129  Q
    |||||||||||||||||||||||||||||||    
T  8955809 ctaaaacatcaaaagaaaaggaatggaggga 8955779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 45590986 - 45591019
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagta 132  Q
    ||||||||||||||||||| ||||||||||||||    
T  45590986 ctaaaacatcaaaagaaaatgaatggagggagta 45591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 39482106 - 39482138
Alignment:
Q  99 ctaaaacatcaaaagaaaaggaatggagggagt 131  Q
    |||||||||||||||||||| ||||||||||||    
T  39482106 ctaaaacatcaaaagaaaagaaatggagggagt 39482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 44751 - 44616
Alignment:
Q  1 tactttaatagtttattatgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  44751 tactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacctcaaaagttttggaatatagttgaagttct 44652  T
Q  101 aaaacatca-aaagaaaaggaatggagggagtatat 135  Q
     |||||||| |||||||||||||| |||||||||||    
T  44651 caaacatcagaaagaaaaggaatgaagggagtatat 44616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 5888 - 5795
Alignment:
Q  244 accattttgcccttattaggggtattttagtaaattggtaattggagaatgttatattatatattcagaaatttttccccttctctctctaaac 337  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || |||||||| |||||||||||||||||    
T  5888 accattttacccttattaggggtattttagtaaattagtaattggagaatgttatgttatatatacataaattttttcccttctctctctaaac 5795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 10411 - 10371
Alignment:
Q  404 ttctccaatttcactcaaaattaccaacatgcaaggctaca 444  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  10411 ttctccattttcactcaaaattaccaacatgcaaggctaca 10371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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