View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_50 (Length: 250)
Name: NF9311_low_50
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4785824 - 4785576
Alignment:
| Q |
1 |
caaatctttctttaaa-aactcaaaaattatattggaggagagtttgtagcaaagttatgtcacaccatcaaggtccatgcctttttaacttaaaatgtg |
99 |
Q |
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| T |
4785824 |
caaatccttctttaaagaactcaaaaattgtattggaggagagtttgtagcaaagttatgtcacaccatcaaggtccatgcctttttaacttaaaatgtg |
4785725 |
T |
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| Q |
100 |
gtggcattgttctcatgtgaagccgaatattatatttggcagtttgtcaaacatcatggttag-------aaatgttacttgatgaaattggtttaaatg |
192 |
Q |
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| T |
4785724 |
gtggcattgttctcatgtgaagccgaatattaaatttggcagtttgtcaagcatcatggttagaaattagaaatgttacttgatgaaattggtttaaatg |
4785625 |
T |
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| Q |
193 |
gatccgtcatcagagacaatgaggatgttgaagattaaaggtctgtgct |
241 |
Q |
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| T |
4785624 |
gatccgtcatcagagacaatgaggatgttgtagattaaaggtctgtgct |
4785576 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 3394001 - 3394029
Alignment:
| Q |
17 |
aactcaaaaattatattggaggagagttt |
45 |
Q |
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| T |
3394001 |
aactcaaaaattatattggaggagagttt |
3394029 |
T |
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