View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9311_low_52 (Length: 248)
Name: NF9311_low_52
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_52 |
 | |
|
| [»] scaffold0284 (2 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0216 (1 HSPs) |
| | |
|
| [»] scaffold0377 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 31963875 - 31963646
Alignment:
| Q |
15 |
catcaatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31963875 |
catcaatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatat |
31963776 |
T |
|
| Q |
115 |
attaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggt |
214 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
31963775 |
gttaatgtgtcaaatgcgagttaactttatacattagatggaagagtagattttgagcaacatataagtcagatgaccaaaatacctaatgtcttaaggt |
31963676 |
T |
|
| Q |
215 |
ttcatgtgaaggtgtgatgtccatctcatt |
244 |
Q |
| |
|
||||||||||| | || |||| |||||||| |
|
|
| T |
31963675 |
ttcatgtgaagttctggtgtcaatctcatt |
31963646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 20106833 - 20106630
Alignment:
| Q |
18 |
caatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatatatt |
117 |
Q |
| |
|
|||||||| | ||||||| |||||| |||||||||| ||||||||| ||||| | ||||||||||||| | | || | || ||| |||||||||| || |
|
|
| T |
20106833 |
caatcaacctttttgaacctgttgtacctaattttgatcttatttgactacgttatataattatggacgcaaatagtcacattattcattaggatatgtt |
20106734 |
T |
|
| Q |
118 |
aatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggtttc |
217 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||| | |||||| ||||||||| |
|
|
| T |
20106733 |
aatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaataaaatataagtgagatgaccaaaatacataatgtcttaaggtttt |
20106634 |
T |
|
| Q |
218 |
atgt |
221 |
Q |
| |
|
|||| |
|
|
| T |
20106633 |
atgt |
20106630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0284 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 7765 - 7537
Alignment:
| Q |
16 |
atcaatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
7765 |
atcaatcaacttgtttgaacatgttgtgtctaattttaatgttatttgattacgtaacataattaaggacgtagacagaggcacaattgattaggatatg |
7666 |
T |
|
| Q |
116 |
ttaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggtt |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
7665 |
ttaatgtgtcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatataagttagatgaccaaaatacctaatgtcttaaggtt |
7566 |
T |
|
| Q |
216 |
tcatgtgaaggtgtgatgtccatctcatt |
244 |
Q |
| |
|
|||||||||| |||| |||| |||||||| |
|
|
| T |
7565 |
tcatgtgaagttgtggtgtcaatctcatt |
7537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0284; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 6499 - 6410
Alignment:
| Q |
116 |
ttaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatg |
205 |
Q |
| |
|
||||||||||||||| ||||||| ||| | |||||||| || | ||||| |||| |||||| ||||| |||||||||| || ||||||| |
|
|
| T |
6499 |
ttaatgtatcaaatgtgagttaaagttccatattggatgcaaaaatagatgttgaacaacatataagtgagatgaccaatatacctaatg |
6410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 316410 - 316619
Alignment:
| Q |
15 |
catcaatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
316410 |
catcaatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattacgaacgtagacagacgcacaattgattaggatat |
316509 |
T |
|
| Q |
115 |
attaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggt |
214 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
316510 |
gttaatgtgtcaaatgcgagttaaaattatacattagatgaaagagtagattttgagcaacatataagtcagatgaccaaaatacctaatgtcttaaggt |
316609 |
T |
|
| Q |
215 |
ttcatgtgaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
316610 |
ttcatgtgaa |
316619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 13918165 - 13918370
Alignment:
| Q |
30 |
ttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatatattaatgtatcaaat |
129 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||| | ||||||||||||| ||| || | ||||||| |||||||||| ||||||| |||||| |
|
|
| T |
13918165 |
ttgaatatgttgtacctaattttgaccttatttgactacgttatataattatggacgcagatagtcacacaattcattaggatatgttaatgtgtcaaat |
13918264 |
T |
|
| Q |
130 |
gcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggtttcatgtgaaggtgt |
229 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| | |||||| ||| | |||||||| |||| | |||||| ||||||||| |||| ||| ||| |
|
|
| T |
13918265 |
gtgagttaacgttatacattggatggaagagtagattttcaacaacatataattgagatgaccgaaatacataatgtcttaaggttttatgtaaagatgt |
13918364 |
T |
|
| Q |
230 |
gatgtc |
235 |
Q |
| |
|
| |||| |
|
|
| T |
13918365 |
ggtgtc |
13918370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 6559824 - 6559958
Alignment:
| Q |
110 |
gatatattaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgtttt |
209 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | || |
|
|
| T |
6559824 |
gatatgttaatgtgtcaaatgcgagttaacgttatagattagatggaagagtagattttgagcaacatataagtcagatgaccaaaatatctaatatctt |
6559923 |
T |
|
| Q |
210 |
aaggtttcatgtgaaggtgtgatgtccatctcatt |
244 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||| |
|
|
| T |
6559924 |
aaggtttcatgtgaagctgtggtgtcaatctcatt |
6559958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 6556581 - 6556676
Alignment:
| Q |
19 |
aatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||| |
|
|
| T |
6556581 |
aatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacgaaattacggacgtagacagactctcaattgattaggatat |
6556676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 36697772 - 36697850
Alignment:
| Q |
116 |
ttaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaa |
194 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||||||| || ||||||| || | |||||| ||||| |||| ||||| |
|
|
| T |
36697772 |
ttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagttagataaccaa |
36697850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 49882622 - 49882851
Alignment:
| Q |
15 |
catcaatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatat |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
49882622 |
catcaatcaacttgttagaacatgttgtgtctaattttgatcttatttgactacttaacataattacggacgtagatagacacacaattgattaggatat |
49882721 |
T |
|
| Q |
115 |
attaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggt |
214 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
49882722 |
gttaatgtgtcaaatacgagttaacgttatacaatggatggaatagtagattttgagcaacatatatgtcagatgaccaaaatacctaatgttttaaggt |
49882821 |
T |
|
| Q |
215 |
ttcatgtgaaggtgtgatgtccatctcatt |
244 |
Q |
| |
|
||||||||||| |||| |||| |||||||| |
|
|
| T |
49882822 |
ttcatgtgaagttgtggtgtcaatctcatt |
49882851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 31089621 - 31089525
Alignment:
| Q |
110 |
gatatattaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgt |
206 |
Q |
| |
|
||||| ||||||| ||| ||| |||||| || ||||||||||| ||||||| |||||||||||||| |||| |||||| ||| || |||||||| |
|
|
| T |
31089621 |
gatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgatcaatatacctaatgt |
31089525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 8358979 - 8358752
Alignment:
| Q |
15 |
catcaatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatat |
114 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||| || | || ||| |||||||||| |
|
|
| T |
8358979 |
catcaatcaacttttttgaacatgttgtacctaattttgaccttatttgactacgttacataattatggacgcagatagtcacattattcattaggatat |
8358880 |
T |
|
| Q |
115 |
attaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggt |
214 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| | |||||||||||||||||||| |||||| ||||| |||||||| |||| | |||||| ||||||| |
|
|
| T |
8358879 |
gttaatgtgtcaaatgtgagttaacgttatacactcgatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttaaggt |
8358780 |
T |
|
| Q |
215 |
ttcatgtgaaggtgtgatgtccatctca |
242 |
Q |
| |
|
|| |||| || |||| |||| |||||| |
|
|
| T |
8358779 |
tttatgtaaatatgtggtgtcaatctca |
8358752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 17887957 - 17888174
Alignment:
| Q |
18 |
caatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatatatt |
117 |
Q |
| |
|
|||||||||| ||| |||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||| || | || ||| |||||||||| || |
|
|
| T |
17887957 |
caatcaacttttttaaacatgatgtacctaattttgaccttatttgactacgttacataattatggacgtagatagtcacattattcattaggatatgtt |
17888056 |
T |
|
| Q |
118 |
aatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggtttc |
217 |
Q |
| |
|
||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||| ||||| |||||||| |||| | |||||| ||||||||| |
|
|
| T |
17888057 |
aatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttaaggtttt |
17888156 |
T |
|
| Q |
218 |
atgtgaaggtgtgatgtc |
235 |
Q |
| |
|
|||| ||| |||| |||| |
|
|
| T |
17888157 |
atgtaaagatgtggtgtc |
17888174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 15342395 - 15342280
Alignment:
| Q |
97 |
cacaattgattaggatatattaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaa |
196 |
Q |
| |
|
|||| ||||||| || |||||||||||| || || ||||||| |||||| ||||||||||||| || ||||||| |||||| ||||| |||||||| | |
|
|
| T |
15342395 |
cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatgacccgta |
15342296 |
T |
|
| Q |
197 |
tgcctaatgttttaag |
212 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
15342295 |
tacctaatgttttaag |
15342280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 15431460 - 15431345
Alignment:
| Q |
97 |
cacaattgattaggatatattaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaa |
196 |
Q |
| |
|
|||| ||||||| || |||||||||||| || || ||||||| |||||| ||||||||||||| || ||||||| |||||| ||||| |||||||| | |
|
|
| T |
15431460 |
cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatgacccgta |
15431361 |
T |
|
| Q |
197 |
tgcctaatgttttaag |
212 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
15431360 |
tacctaatgttttaag |
15431345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 15522764 - 15522649
Alignment:
| Q |
97 |
cacaattgattaggatatattaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaa |
196 |
Q |
| |
|
|||| ||||||| || |||||||||||| || || ||||||| |||||| ||||||||||||| || ||||||| |||||| ||||| |||||||| | |
|
|
| T |
15522764 |
cacacttgattaagagatattaatgtattaagtgtgagttaaagttatatattggatggaagattacattttgaacaacatataagtgagatgacccgta |
15522665 |
T |
|
| Q |
197 |
tgcctaatgttttaag |
212 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
15522664 |
tacctaatgttttaag |
15522649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 25087790 - 25087722
Alignment:
| Q |
18 |
caatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacg |
86 |
Q |
| |
|
|||| ||||| ||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
25087790 |
caattaacttttttgaacatattgtacctaattttgaccttatttgactacgttacataattatggacg |
25087722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 242
Target Start/End: Original strand, 10279580 - 10279750
Alignment:
| Q |
72 |
acataattatggacgtagacagacgcacaattgattaggatatattaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgag |
171 |
Q |
| |
|
||||||||| ||||| || || |||||| ||||||| | || ||||||| |||| || |||||||| || |||||| ||| ||||||||||||| | |
|
|
| T |
10279580 |
acataattacagacgtggatagtcgcacacttgattaatagatgttaatgtgtcaagtgtgagttaaccttctacattacatgaaagagtagattttcaa |
10279679 |
T |
|
| Q |
172 |
caacatgtaagtcagatgaccaaaatgcctaatgttttaaggtttcatgtgaaggtgtgatgtccatctca |
242 |
Q |
| |
|
|||||| ||| | ||||| | ||||| |||||| || |||||| ||| ||| ||||||||| |||||| |
|
|
| T |
10279680 |
caacatataaatgagatggtccaaatgtctaatgccttcaggttttttgtaaagatgtgatgtcaatctca |
10279750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 42797186 - 42797105
Alignment:
| Q |
135 |
ttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggttt |
216 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| ||||||||||| ||||| ||||||| || || | ||||| ||||||||| |
|
|
| T |
42797186 |
ttaaagttatacattatatgtaagagtagatattgagcaacatataagtgagatgactaatatttccaatgtcttaaggttt |
42797105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 18290645 - 18290421
Alignment:
| Q |
18 |
caatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatatatt |
117 |
Q |
| |
|
|||||||| | |||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||| || | |||||||||||||||||| || |
|
|
| T |
18290645 |
caatcaacctttttgaatatgttgtacctaattttgaccttatttgactacgttacataattatggacgcagaaagtcacacaattgattaggatatgtt |
18290546 |
T |
|
| Q |
118 |
aatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggtttc |
217 |
Q |
| |
|
|||| |||||| ||||||||| |||||| |||||||||||||||||||| | |||||| ||||| |||||||| |||| | |||||| ||||||||| |
|
|
| T |
18290545 |
gatgtgacaaatgtgagttaacggtatacactggatggaagagtagattttaaacaacatataagtgagatgaccgaaatacataatgtcttaaggtttt |
18290446 |
T |
|
| Q |
218 |
atgtgaaggtgtgatgtccatctca |
242 |
Q |
| |
|
|||| ||| |||| |||| |||||| |
|
|
| T |
18290445 |
atgtaaagatgtggtgtcaatctca |
18290421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 42079008 - 42078960
Alignment:
| Q |
142 |
tatacattggatggaagagtagattttgagcaacatgtaagtcagatga |
190 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
42079008 |
tatacatttgatgcaagagtagatattgagcaacatgtaagtgagatga |
42078960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 20779468 - 20779695
Alignment:
| Q |
15 |
catcaatcaacttgtttgaacatgttgtgtctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatat |
114 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||||||||||||| | ||||| ||||||||||||||| ||| || | || ||| |||||||||| |
|
|
| T |
20779468 |
catcaatcaacttttttgaacatgttgtacctacttttgaccttatttaactacgttacataattatggacgcagatagtcacattattcattaggatat |
20779567 |
T |
|
| Q |
115 |
attaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggt |
214 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||| ||||| |||||||| |||| | |||||| || |||| |
|
|
| T |
20779568 |
gttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttgaggt |
20779667 |
T |
|
| Q |
215 |
ttcatgtgaaggtgtgatgtccatctca |
242 |
Q |
| |
|
|| |||| || |||| |||| |||||| |
|
|
| T |
20779668 |
tttatgtaaatatgtggtgtcaatctca |
20779695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 15878779 - 15878950
Alignment:
| Q |
45 |
ctaattttgaccttatttgattacgtaacataattatggacgtagacagacgcacaattgattaggatatattaatgtatcaaatgcgagttaacgttat |
144 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||||||||| || | ||||||| |||||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
15878779 |
ctaattttgaccttatttgactacgttatttaattatggacgtagatagtcacacaattcattaggatatgttaatgtgtcaaatgtgagttaacgttat |
15878878 |
T |
|
| Q |
145 |
acattggatggaagagtagattttgagcaacatgtaagtcagatgaccaaaatgcctaatgttttaaggttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| | |||||||| ||| | |||||| ||||||||| |
|
|
| T |
15878879 |
acattggatggaagagtagattttgaacaacatataattgagatgaccgaaacacataatgtcttaaggttt |
15878950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 12595 - 12654
Alignment:
| Q |
132 |
gagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatgac |
191 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||||| |||||| ||||| ||||||| |
|
|
| T |
12595 |
gagttaaagttatacattggatggaatagtatattttgaacaacatataagtgagatgac |
12654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 29248 - 29168
Alignment:
| Q |
110 |
gatatattaatgtatcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatgtaagtcagatga |
190 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||| |||||||||| || ||||||| || | |||||| ||||| |||||| |
|
|
| T |
29248 |
gatatgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagtgagatga |
29168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0377 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0377
Description:
Target: scaffold0377; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 12602 - 12554
Alignment:
| Q |
142 |
tatacattggatggaagagtagattttgagcaacatgtaagtcagatga |
190 |
Q |
| |
|
|||||||| |||| ||||||| || ||||||||||||||||| |||||| |
|
|
| T |
12602 |
tatacattagatgcaagagtaaatattgagcaacatgtaagtgagatga |
12554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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