View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9311_low_56 (Length: 246)
Name: NF9311_low_56
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_56 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 49425840 - 49426085
Alignment:
| Q |
1 |
tatgttttataaaataatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatcccta |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425840 |
tatgttttatgaaataatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatcccta |
49425939 |
T |
|
| Q |
101 |
atgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425940 |
atgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgatt |
49426039 |
T |
|
| Q |
201 |
cattaagacagttcaaaagctcccttctcattctcatagcagtatt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49426040 |
cattaagacagttcaaaagctcccttctcattctcatagcagtatt |
49426085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 49423694 - 49423904
Alignment:
| Q |
12 |
aaataatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggc-gaaatcttaagagcgtaagaaatgctatccctaatgtcttgaa |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| ||||| ||| || | |||| ||||| || |||| ||| ||||| |||||||||||||||||| |
|
|
| T |
49423694 |
aaataatttgctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaa |
49423793 |
T |
|
| Q |
111 |
agttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagaca |
210 |
Q |
| |
|
||||||| |||| ||||||||| || || |||||||| | ||||||||| |||||||| ||| ||||||||| ||||||||||| | |||||||| |
|
|
| T |
49423794 |
agttgaatctatcaaccatctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagaca |
49423893 |
T |
|
| Q |
211 |
gttcaaaagct |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
49423894 |
gttcaaaagct |
49423904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 43363344 - 43363144
Alignment:
| Q |
31 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc |
130 |
Q |
| |
|
||||||||||||||||| |||| ||| || | ||| |||| ||||||||| ||| ||||| ||||||| ||||||||||||||||| |||| || |||| |
|
|
| T |
43363344 |
atgaagttgtaacatga--ttgcaaatgtgcaatggtgaaagcttaagagcataa-aaatgttatcccttatgtcttgaaagttgaatctattaatcatc |
43363248 |
T |
|
| Q |
131 |
tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca |
230 |
Q |
| |
|
|| ||||| |||||||||| | ||||||| |||||| ||||| || |||||| |||||||||||| ||||||||||| ||||||| || |||||||| |
|
|
| T |
43363247 |
tcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaagcttccccaaatgactcattaagacaattcaaaaacttccttctca |
43363150 |
T |
|
| Q |
231 |
ttctca |
236 |
Q |
| |
|
|||||| |
|
|
| T |
43363149 |
ttctca |
43363144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 17640994 - 17641049
Alignment:
| Q |
93 |
tatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaa |
148 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||||| || ||||||||||||||| |
|
|
| T |
17640994 |
tatccctaaattcttgaaagttgaatctatcaaccatgtcctacatttagtttaaa |
17641049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University