View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9311_low_58 (Length: 245)

Name: NF9311_low_58
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9311_low_58
NF9311_low_58
[»] chr3 (8 HSPs)
chr3 (1-235)||(988791-989025)
chr3 (33-85)||(1891515-1891567)
chr3 (29-87)||(955921-955979)
chr3 (39-85)||(1004028-1004074)
chr3 (39-85)||(1022025-1022071)
chr3 (36-81)||(1941027-1941072)
chr3 (28-81)||(2697190-2697243)
chr3 (36-85)||(2931466-2931515)
[»] chr8 (2 HSPs)
chr8 (33-85)||(31144847-31144899)
chr8 (36-85)||(19727414-19727463)
[»] chr5 (5 HSPs)
chr5 (40-84)||(23754491-23754535)
chr5 (40-84)||(23774525-23774569)
chr5 (40-84)||(23819946-23819990)
chr5 (40-84)||(23861478-23861522)
chr5 (57-85)||(23691511-23691539)
[»] chr4 (1 HSPs)
chr4 (43-87)||(20020248-20020292)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 989025 - 988791
Alignment:
Q  1 atcctcataacttgcctttgttttttcggctcttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaacaataatggagtttg 100  Q
    ||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989025 atcctcataacgtgcttttgtttttttggctcttgaagaaggggcaattccttatcttttctaatggaagggttccacaatcgaacaataatggagtttg 988926  T
Q  101 aatcatcatcagcagcaagacagaggatgccattacacgagccaacgaagtaagcagaatggctgaaaggcaaataggattgagcgatgttggtagcggt 200  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  988925 aatcatcagcagcagcaagacagaggatgccatcacacgagccaaggaagtaagcagaatggctgaaaggcaaataggattgagcgatgttggtagcggt 988826  T
Q  201 gatggtgtctagtgggtaagactcgatgatgatgt 235  Q
    |||||||||||||||||||||||||||||||||||    
T  988825 gatggtgtctagtgggtaagactcgatgatgatgt 988791  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 1891515 - 1891567
Alignment:
Q  33 ttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 85  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  1891515 ttgaagagagggcaattccttaaattttctaatggaagggttccacaatcgaa 1891567  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 955979 - 955921
Alignment:
Q  29 gctcttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaaca 87  Q
    |||||| |||||||||||| |||||   ||||||||| |||||||| ||||||||||||    
T  955979 gctcttcaagagggggcaaatccttgaattttctaatagaagggttacacaatcgaaca 955921  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 1004074 - 1004028
Alignment:
Q  39 agggggcaattccttatcttttctaatggaagggttccacaatcgaa 85  Q
    |||||||||||||||   ||||||||||||||||||||||| |||||    
T  1004074 agggggcaattcctttaattttctaatggaagggttccacagtcgaa 1004028  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 1022071 - 1022025
Alignment:
Q  39 agggggcaattccttatcttttctaatggaagggttccacaatcgaa 85  Q
    |||||||||||||||   ||||||||||||||||||||||| |||||    
T  1022071 agggggcaattcctttaattttctaatggaagggttccacagtcgaa 1022025  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 1941027 - 1941072
Alignment:
Q  36 aagagggggcaattccttatcttttctaatggaagggttccacaat 81  Q
    ||||| ||||||||||||   |||||||||||||||||||||||||    
T  1941027 aagagagggcaattccttgaattttctaatggaagggttccacaat 1941072  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 2697190 - 2697243
Alignment:
Q  28 ggctcttgaagagggggcaattccttatcttttctaatggaagggttccacaat 81  Q
    |||| ||||| || |||||||||||||  ||||||||| |||||||||||||||    
T  2697190 ggcttttgaaaagagggcaattccttaaattttctaattgaagggttccacaat 2697243  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 2931515 - 2931466
Alignment:
Q  36 aagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 85  Q
    ||||| ||||||||||||   ||||| |||||||||||||||||||||||    
T  2931515 aagagagggcaattccttgaattttcgaatggaagggttccacaatcgaa 2931466  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 31144847 - 31144899
Alignment:
Q  33 ttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 85  Q
    |||||||  ||||||||||||   |||||||||||||||||||||||||||||    
T  31144847 ttgaagatagggcaattccttgaattttctaatggaagggttccacaatcgaa 31144899  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 19727463 - 19727414
Alignment:
Q  36 aagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 85  Q
    |||||||||||| |||||   |||||||| ||||||||||||||||||||    
T  19727463 aagagggggcaagtccttgaattttctaacggaagggttccacaatcgaa 19727414  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 23754491 - 23754535
Alignment:
Q  40 gggggcaattccttatcttttctaatggaagggttccacaatcga 84  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23754491 gggggcaattccttgaattttctaatggaagggttccacaatcga 23754535  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 23774525 - 23774569
Alignment:
Q  40 gggggcaattccttatcttttctaatggaagggttccacaatcga 84  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23774525 gggggcaattccttgaattttctaatggaagggttccacaatcga 23774569  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 23819946 - 23819990
Alignment:
Q  40 gggggcaattccttatcttttctaatggaagggttccacaatcga 84  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23819946 gggggcaattccttgaattttctaatggaagggttccacaatcga 23819990  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 23861478 - 23861522
Alignment:
Q  40 gggggcaattccttatcttttctaatggaagggttccacaatcga 84  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23861478 gggggcaattccttgaattttctaatggaagggttccacaatcga 23861522  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 23691539 - 23691511
Alignment:
Q  57 ttttctaatggaagggttccacaatcgaa 85  Q
    |||||||||||||||||||||||||||||    
T  23691539 ttttctaatggaagggttccacaatcgaa 23691511  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 20020248 - 20020292
Alignment:
Q  43 ggcaattccttatcttttctaatggaagggttccacaatcgaaca 87  Q
    |||||||||||   ||||||||||||||||||||||||| |||||    
T  20020248 ggcaattccttgaattttctaatggaagggttccacaatagaaca 20020292  T

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