View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9311_low_60 (Length: 242)

Name: NF9311_low_60
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9311_low_60
NF9311_low_60
[»] chr6 (13 HSPs)
chr6 (4-224)||(9827096-9827318)
chr6 (1-172)||(11846648-11846820)
chr6 (1-179)||(11971812-11971992)
chr6 (3-175)||(7176099-7176272)
chr6 (4-179)||(26186312-26186488)
chr6 (55-166)||(5416438-5416550)
chr6 (57-179)||(23300818-23300941)
chr6 (57-179)||(32613563-32613686)
chr6 (57-129)||(2453787-2453859)
chr6 (54-117)||(2108498-2108561)
chr6 (3-93)||(1147966-1148056)
chr6 (3-94)||(20722884-20722974)
chr6 (54-93)||(7551054-7551093)
[»] chr3 (14 HSPs)
chr3 (28-179)||(46892978-46893130)
chr3 (55-179)||(44471419-44471544)
chr3 (57-179)||(33231170-33231293)
chr3 (55-179)||(44681654-44681778)
chr3 (1-179)||(28550912-28551091)
chr3 (54-130)||(779156-779232)
chr3 (54-158)||(44285953-44286058)
chr3 (67-179)||(23659784-23659899)
chr3 (5-116)||(30553719-30553830)
chr3 (1-129)||(47830880-47831008)
chr3 (111-179)||(30554259-30554328)
chr3 (54-117)||(27524402-27524467)
chr3 (16-120)||(26918101-26918204)
chr3 (89-167)||(54246853-54246932)
[»] chr2 (14 HSPs)
chr2 (3-179)||(33036648-33036825)
chr2 (14-179)||(37630729-37630891)
chr2 (5-173)||(22847819-22847984)
chr2 (63-179)||(30906505-30906623)
chr2 (55-179)||(4241091-4241216)
chr2 (1-176)||(3919473-3919649)
chr2 (19-179)||(44018570-44018731)
chr2 (57-176)||(10722203-10722323)
chr2 (54-179)||(3689770-3689891)
chr2 (60-176)||(5526627-5526744)
chr2 (54-120)||(29108881-29108947)
chr2 (3-94)||(28200045-28200136)
chr2 (55-94)||(30340862-30340901)
chr2 (9-46)||(3689542-3689579)
[»] chr7 (14 HSPs)
chr7 (22-217)||(25544833-25545031)
chr7 (54-176)||(31136543-31136666)
chr7 (3-171)||(45595739-45595906)
chr7 (56-176)||(12470682-12470804)
chr7 (28-176)||(49124615-49124765)
chr7 (56-176)||(12471396-12471517)
chr7 (6-179)||(2500726-2500899)
chr7 (55-179)||(39571460-39571583)
chr7 (56-172)||(48071018-48071134)
chr7 (4-117)||(22331465-22331576)
chr7 (20-85)||(19601804-19601869)
chr7 (60-94)||(27226573-27226607)
chr7 (54-95)||(46264897-46264938)
chr7 (54-86)||(30396803-30396835)
[»] chr8 (10 HSPs)
chr8 (54-179)||(3767317-3767443)
chr8 (22-179)||(20860005-20860163)
chr8 (54-217)||(9505390-9505557)
chr8 (57-179)||(32322202-32322325)
chr8 (1-174)||(3555022-3555196)
chr8 (61-167)||(17913157-17913265)
chr8 (56-129)||(42614782-42614855)
chr8 (1-94)||(25343624-25343718)
chr8 (1-94)||(25654374-25654468)
chr8 (83-119)||(40434637-40434673)
[»] chr4 (11 HSPs)
chr4 (14-172)||(42141645-42141802)
chr4 (58-179)||(53392806-53392928)
chr4 (56-179)||(19681728-19681852)
chr4 (1-179)||(9140620-9140799)
chr4 (58-166)||(13207050-13207159)
chr4 (28-110)||(39838863-39838945)
chr4 (57-129)||(3042047-3042118)
chr4 (55-95)||(8605784-8605824)
chr4 (54-94)||(13981467-13981508)
chr4 (2-46)||(3042132-3042175)
chr4 (58-94)||(38388484-38388520)
[»] chr1 (9 HSPs)
chr1 (1-179)||(32678060-32678240)
chr1 (56-180)||(8414209-8414334)
chr1 (56-158)||(11911993-11912096)
chr1 (4-172)||(27320086-27320256)
chr1 (1-94)||(4407260-4407353)
chr1 (54-179)||(17531007-17531126)
chr1 (14-129)||(4635009-4635121)
chr1 (57-136)||(42616330-42616408)
chr1 (65-108)||(48640864-48640907)
[»] scaffold0564 (1 HSPs)
scaffold0564 (1-179)||(6693-6871)
[»] chr5 (7 HSPs)
chr5 (1-179)||(1497799-1497977)
chr5 (58-167)||(20665743-20665853)
chr5 (54-179)||(7238950-7239078)
chr5 (54-179)||(7244126-7244254)
chr5 (55-128)||(17770638-17770710)
chr5 (7-95)||(29126679-29126767)
chr5 (57-99)||(42307035-42307077)
[»] scaffold0590 (1 HSPs)
scaffold0590 (68-179)||(8564-8676)
[»] scaffold1194 (1 HSPs)
scaffold1194 (56-179)||(2206-2330)
[»] scaffold0002 (1 HSPs)
scaffold0002 (105-179)||(344063-344137)
[»] scaffold0070 (2 HSPs)
scaffold0070 (54-94)||(34261-34301)
scaffold0070 (54-94)||(14311-14351)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 9827318 - 9827096
Alignment:
Q  4 gtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnt-tcatattttcacaaatttgtatttcatgcatacaacatactcaaatat 102  Q
    ||||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9827318 gtttggatcagttcggttgatcattttgtttgaaaatacaattaaaaaaaaatcatattttcacaaatttgtatttcatgcatacaacatactcaaatat 9827219  T
Q  103 ttcatagaactttgttttccatgttctccgtttt-cataatactttgtataactaacctgaaaaaactaacaagagattaatcccaacgattgtgacgaa 201  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9827218 ttcatagaactttgttttccatgttctccatttttcataatactttgtataactaacctgaaaaaactaacaagagattaatcccaacgactgtgacgaa 9827119  T
Q  202 cgatggattaggtgtgggtgact 224  Q
    |||||||||||||||| ||||||    
T  9827118 cgatggattaggtgtgagtgact 9827096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 11846820 - 11846648
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaat 100  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||    
T  11846820 tcggtttggatcagttcggttgatcggtttgtttgaaaatacaattaaaaaaattcatattttcacaaatttgtatttcatgcatacaacatgctcaaat 11846721  T
Q  101 atttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaac 172  Q
    |||||||||||||||||||| ||||||||| | |||||| | || |||||||||||||| |||||||||||||    
T  11846720 atttcatagaactttgtttttcatgttctctgtttttcaaactattttgtataactaacatgaaaaaactaac 11846648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 11971992 - 11971812
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnn-ttcatattttcacaaatttgtatttcatgcatacaacatactcaaa 99  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||        || |||||||||||||||||||||||||||||||||||| ||||||    
T  11971992 tcggtttggatcagttcggttgatcggtttgtttgaaaatacaattaaaaaaaatttatattttcacaaatttgtatttcatgcatacaacatgctcaaa 11971893  T
Q  100 tatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||||||||||||||||||||| ||||||||| | |||||| | ||||||||||||||||| ||||||||||||||||||||    
T  11971892 tatttcatagaactttgtttttcatgttctctgtttttcaaactactttgtataactaacatgaaaaaactaacaagagat 11971812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 7176099 - 7176272
Alignment:
Q  3 ggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatat 102  Q
    |||||||||| ||||||||||||  ||||||||||| ||| |||       |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7176099 ggtttggatcggtttggttgatcggtttgtttgaaagtactatttaaaaaattcatattttcacaaatttgcatttcatgcatacaacatactcaaatat 7176198  T
Q  103 ttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaag 175  Q
    |||||||||||||||||||||||| ||| | |||||| | |||||| |||||||||| ||||||||||||||||    
T  7176199 ttcatagaactttgttttccatgtactctgtttttcaaactactttttataactaacatgaaaaaactaacaag 7176272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 26186312 - 26186488
Alignment:
Q  4 gtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatt 103  Q
    ||||||||| ||| ||||||||| ||||||| |||||||||||       | |||||||| | |||||||||||||| ||||||||||||||||||||||    
T  26186312 gtttggatcggttcggttgatcaatttgtttaaaaatacaattaaaaaactccatatttttaaaaatttgtatttcaagcatacaacatactcaaatatt 26186411  T
Q  104 tcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||||| ||||||||||| | |||| || | |||||| | |||||||||||| |||| ||||||||||||||||||||    
T  26186412 tcatataactttgttttacgtgttatctgtttttcaaactactttgtataaataacatgaaaaaactaacaagagat 26186488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 5416550 - 5416438
Alignment:
Q  55 tcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataa 153  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| | |||||| |  |||||||||||    
T  5416550 tcatattttcataaatttgtatttcatgcatacaacatactctaatatttcatataactttgttttccatgctctctgtttttcaaacgactttgtataa 5416451  T
Q  154 ctaacctgaaaaa 166  Q
    ||||| |||||||    
T  5416450 ctaacatgaaaaa 5416438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 23300941 - 23300818
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccgtt-ttcataatactttgtataact 155  Q
    ||||||||| ||||||||||||||  || ||||||||||||||||||| ||||||| ||||||| |||||||||  || |||| | ||||||||||||||    
T  23300941 atattttcataaatttgtatttcaaacaaacaacatactcaaatatttaatagaaccttgtttttcatgttctctattgttcaaactactttgtataact 23300842  T
Q  156 aacctgaaaaaactaacaagagat 179  Q
    ||| ||| ||||||||||||||||    
T  23300841 aacatgataaaactaacaagagat 23300818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 32613563 - 32613686
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtataact 155  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||   |||||| | |||||| ||||| |    
T  32613563 atatttttacaaatttgtatttcattcatacaacatactcaactatttcatacatctttgttttccatgttctctatttttcaaactactttatataatt 32613662  T
Q  156 aacctgaaaaaactaacaagagat 179  Q
    ||| ||||||||||||||| ||||    
T  32613663 aacatgaaaaaactaacaatagat 32613686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 2453787 - 2453859
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttct 129  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||||||| || ||||||||| ||||||    
T  2453787 atattttcacatatttgtgtttcatgcatacaacatacttaaatatttcatagtacattgttttccgtgttct 2453859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 2108498 - 2108561
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgt 117  Q
    |||||||| |||||||||||||||||||||||||  | |||| ||||||||||| |||||||||    
T  2108498 ttcatattatcacaaatttgtatttcatgcatacgtcgtactaaaatatttcatggaactttgt 2108561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 1148056 - 1147966
Alignment:
Q  3 ggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacata 93  Q
    |||||||||||||| ||||||||  ||| |||||||||| |||         ||||||| |||||||||||||||||||||||| ||||||    
T  1148056 ggtttggatcagttcggttgatcggtttatttgaaaataaaataaaataaactcatattctcacaaatttgtatttcatgcataaaacata 1147966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 20722974 - 20722884
Alignment:
Q  3 ggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatac 94  Q
    ||||| ||||| || ||||||||| ||| |||||||||| ||||       |||||||| ||||||| ||||||||||||||||||||||||    
T  20722974 ggtttagatcaattcggttgatcagtttatttgaaaatagaattaaaaaa-ttcatattgtcacaaacttgtatttcatgcatacaacatac 20722884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 7551054 - 7551093
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacata 93  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  7551054 ttcatatttttacaaatttgtatttaatgcatacaacata 7551093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 46893130 - 46892978
Alignment:
Q  28 tttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgtt 127  Q
    |||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46893130 tttgtttgaaaatacaattaaataaattcatattttcacaaatttgtttttcatgcatacaacatactcaaatatttcatagaactttgttttccatgtt 46893031  T
Q  128 ctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||| | |||||| | ||||||||||||||||| ||||||||||||||||||||    
T  46893030 ctctgtttttcaaactactttgtataactaacatgaaaaaactaacaagagat 46892978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 44471544 - 44471419
Alignment:
Q  55 tcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataa 153  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||    
T  44471544 tcatattttcacaaatttgtatttcatgcatacgacatactcaaatatttcatagaactttgttttccatgttctctgtttttcaaactactttgtataa 44471445  T
Q  154 ctaacctgaaaaaactaacaagagat 179  Q
    ||||| ||||||||||||||||||||    
T  44471444 ctaacatgaaaaaactaacaagagat 44471419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 33231170 - 33231293
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataact 155  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||| | ||||||||||||||    
T  33231170 atattttcagaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttattttctatgttctctgtttttcaaattactttgtataact 33231269  T
Q  156 aacctgaaaaaactaacaagagat 179  Q
    ||| | ||||||||||||||||||    
T  33231270 aacataaaaaaactaacaagagat 33231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 44681654 - 44681778
Alignment:
Q  55 tcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| | |||||| |||||    
T  44681654 tcatattttcacaaatttgtatttcatgcatacaacatactcaagtatttcatagaactttgttttccatgttctctgtttttcaaactactttctataa 44681753  T
Q  154 ctaacctgaaaaaactaacaagagat 179  Q
    ||||| |  |||||||||||||||||    
T  44681754 ctaacat-caaaaactaacaagagat 44681778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 28551091 - 28550912
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaat 100  Q
    |||||||||||| ||| ||||||||  |||||||||| ||| ||||       | |||||||||| |||||| |||||||| ||||||||||||| ||||    
T  28551091 tcggtttggatcggttcggttgatcgatttgtttgaacatataattaaaaaaatccatattttcataaatttatatttcattcatacaacatacttaaat 28550992  T
Q  101 atttcatagaactttgttttccatgttctccgtt-ttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||||||||||||||| |||||||| |||||  || |||| | |||||| |||||||||| ||||||||||||||||||||    
T  28550991 atttcatagaactttattttccatattctctattcttcaaactactttatataactaacatgaaaaaactaacaagagat 28550912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 779156 - 779232
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc 130  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  779156 ttcatattttcacaaatttgtattgcatgcatacaacatactcaaatatttcatagaactttgtttttcatgttctc 779232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 44286058 - 44285953
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtata 152  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||||| | |||||||||||    
T  44286058 ttcatatttttacaaatttgtattttatgcatacaacatactcaaatattttatagaactttgttttctatgttttctgtttttcaaactactttgtata 44285959  T
Q  153 actaac 158  Q
    ||||||    
T  44285958 actaac 44285953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 23659899 - 23659784
Alignment:
Q  67 aaatttgtatttcatgcatacaacatactcaaatatttcatagaac--tttgttttccatgttctccg-ttttcataatactttgtataactaacctgaa 163  Q
    |||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||| |||||| | |||||| | ||||||||||||||||  ||||    
T  23659899 aaatttgtatttcatgcgcacaacatactcaaatatttcatagaactttttgttttccacgttctctgtttttcaaactactttgtataactaatatgaa 23659800  T
Q  164 aaaactaacaagagat 179  Q
    ||||||||||||||||    
T  23659799 aaaactaacaagagat 23659784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 30553719 - 30553830
Alignment:
Q  5 tttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatattt 104  Q
    |||||||| ||||||||| ||  ||||||| |||||||||||       |  |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  30553719 tttggatcggtttggttggtcgatttgtttaaaaatacaattaaaaaaatctatattttcacaaatttgtatttcatgcatacaacatgctcaagtattt 30553818  T
Q  105 catagaactttg 116  Q
    |||| |||||||    
T  30553819 cataaaactttg 30553830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 47830880 - 47831008
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaat 100  Q
    |||||||||||| | | ||||||||| ||||||||||| |||||||       | |||||||||| |||| || |||||||||||| ||||||| |||||    
T  47830880 tcggtttggatcggatcggttgatcagtttgtttgaaactacaattaaaaaaatccatattttcaaaaatctgcatttcatgcataaaacatacacaaat 47830979  T
Q  101 atttcatagaactttgttttccatgttct 129  Q
    ||| ||  ||||| |||||||||| ||||    
T  47830980 attccaaggaactctgttttccatcttct 47831008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 30554259 - 30554328
Alignment:
Q  111 actttgttttccatgttctccgttttcataa-tactttgtataactaacctgaaaaaactaacaagagat 179  Q
    |||||||||||||||||||| |||||   || |||||| |||||||||| ||||||||||||||||||||    
T  30554259 actttgttttccatgttctctgttttttaaactactttatataactaacatgaaaaaactaacaagagat 30554328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 27524467 - 27524402
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatg--catacaacatactcaaatatttcatagaactttgt 117  Q
    |||| ||||||||||||||||||||||||   ||||| |||||| ||||||||||| |||||||||    
T  27524467 ttcaaattttcacaaatttgtatttcatgtatatacatcatactaaaatatttcatggaactttgt 27524402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 26918101 - 26918204
Alignment:
Q  16 ttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactc-aaatatttcatagaactt 114  Q
    ||||||||||  |||||||||||||||||||       | |||| |||||||||||||||||| ||| |||||||||| || ||||||||||| ||| ||    
T  26918101 ttggttgatcggtttgtttgaaaatacaattaaaaaa-tccatagtttcacaaatttgtattt-atgtatacaacatattcaaaatatttcatcgaattt 26918198  T
Q  115 tgtttt 120  Q
    ||||||    
T  26918199 tgtttt 26918204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 54246932 - 54246853
Alignment:
Q  89 acatactcaaatatttcatagaactttgttttccatgttc-tccgttttcataatactttgtataactaacctgaaaaaa 167  Q
    ||||||||||||||||||| |||||||||||||  ||||| |   |||||| | |||||||| |||||||| ||||||||    
T  54246932 acatactcaaatatttcattgaactttgttttcagtgttctttatttttcaaactactttgtgtaactaacatgaaaaaa 54246853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 33036648 - 33036825
Alignment:
Q  3 ggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatat 102  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||       ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  33036648 ggtttggatcggttcggttgatcagtttgtttgaaaatacaattaaaaatattcatattttcacaaatttgtattttatacatacaacatactcaaatat 33036747  T
Q  103 ttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    || ||| ||||||||||||||| ||||  | |||||| | || |||||||||||||| ||||||||||||||| ||||    
T  33036748 tttataaaactttgttttccattttctttgcttttcaaactagtttgtataactaacatgaaaaaactaacaaaagat 33036825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 37630891 - 37630729
Alignment:
Q  14 gtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaact 113  Q
    ||||||||||||| |||||||||||||||||||       |    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37630891 gtttggttgatcagtttgtttgaaaatacaattaaaaaatt----aatttcacaaatttgtatttcatgcatacaaaatactcaaatatttcatagaact 37630796  T
Q  114 ttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    |||||||| |||||||| | |||||| | ||||||||||||||||| ||||||||||||||||||||    
T  37630795 ttgttttcaatgttctctgtttttcaaactactttgtataactaacatgaaaaaactaacaagagat 37630729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 22847819 - 22847984
Alignment:
Q  5 tttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatattt 104  Q
    |||||||  ||||||||||||  ||||||| |||||||||||       ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22847819 tttggattggtttggttgatcggtttgtttaaaaatacaattaaaaa--ttcatattttcacaaatttttatttcatgcatacaacatactcaaatattt 22847916  T
Q  105 catagaactttg-ttttccatgttctccgttttcataatactttgtataactaacctgaaaaaactaaca 173  Q
    |||||||||||| |||||||| |||||| |||  | | ||||||||||||||||| ||||||||||||||    
T  22847917 catagaactttgtttttccatattctcccttt--aaactactttgtataactaacatgaaaaaactaaca 22847984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 30906505 - 30906623
Alignment:
Q  63 tcacaaatttgtattt-catgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacct 160  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||||||||| |||| |    
T  30906505 tcacaaatttgtattttcatgtatacaacatactcaaatatttcatagaactttgttttccatgttctctgtttttcaaactactttgtataattaacat 30906604  T
Q  161 gaaaaaactaacaagagat 179  Q
    |||||||||||||||||||    
T  30906605 gaaaaaactaacaagagat 30906623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 4241216 - 4241091
Alignment:
Q  55 tcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtataa 153  Q
    ||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||    
T  4241216 tcatattttcaaaaatttgtatttcatgtctacaacatactcgaatatttcatagaactttgttttccatgttctctctttttcaaactactttgtataa 4241117  T
Q  154 ctaacctgaaaaaactaacaagagat 179  Q
     |||| |||||||||||||| |||||    
T  4241116 ttaacatgaaaaaactaacatgagat 4241091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 3919473 - 3919649
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaat 100  Q
    |||||||||||| ||| ||||||||  |||||| ||||||||||||       |||||||||||||||||||||| || ||| |||||||||||||||||    
T  3919473 tcggtttggatcggttcggttgatcggtttgttcgaaaatacaattaaaaaaattcatattttcacaaatttgtagtttatgtatacaacatactcaaat 3919572  T
Q  101 atttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaaga 176  Q
    |||| || ||| ||||||||| |||||| | | |||||| | |||||||| |||||||| |||||||||||||||||    
T  3919573 attttatggaaatttgttttctatgttcactgtttttcaaactactttgtgtaactaacatgaaaaaactaacaaga 3919649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 44018570 - 44018731
Alignment:
Q  19 gttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgtt 118  Q
    |||||||  |||||||||||||||||||       ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||    
T  44018570 gttgatcggtttgtttgaaaatacaattaaaaaaattcatatttacacaaatttgtatttcatgcatacatcatactcaaatatttcacataactttgtt 44018669  T
Q  119 ttccatgttctc-cgttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||||||||||||  ||||||| | ||||||||||||  ||| || || ||||||||| ||||    
T  44018670 ttccatgttctctggttttcaaactactttgtataatcaacatggaagaactaacaaaagat 44018731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 10722323 - 10722203
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccgtttt-cataatactttgtataact 155  Q
    ||||||||| || ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||| || | ||| ||||||||||    
T  10722323 atattttcataattttgtatttcatgcatacaacgtactcaaatatttgatagaattttgttttccatgttctctgttttacaaactacattgtataact 10722224  T
Q  156 aacctgaaaaaactaacaaga 176  Q
    ||| |||||||||||| ||||    
T  10722223 aacatgaaaaaactaataaga 10722203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 3689770 - 3689891
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtata 152  Q
    |||||||||||||||||||||||||| ||||||||     ||||||||||||||||||||||||||| ||||||||  | |||||| | |||||| ||||    
T  3689770 ttcatattttcacaaatttgtatttcgtgcataca-----ctcaaatatttcatagaactttgtttttcatgttctatgtttttcaaactactttatata 3689864  T
Q  153 actaacctgaaaaaactaacaagagat 179  Q
    |||||| ||||||||||||||||||||    
T  3689865 actaacatgaaaaaactaacaagagat 3689891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 5526744 - 5526627
Alignment:
Q  60 ttttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccgtttt-cataatactttgtataactaac 158  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| | ||  |||| || | ||| |||||||||||||    
T  5526744 ttttcacaaatttgtatttcatacatacaacatactcaaatatttcatagaactttgtttgtcatgctatcttttttccaaactacattgtataactaac 5526645  T
Q  159 ctgaaaaaactaacaaga 176  Q
     |||||||||||||||||    
T  5526644 atgaaaaaactaacaaga 5526627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 29108881 - 29108947
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgtttt 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||  |||||||||||    
T  29108881 ttcatattttcacaaatttgtatttcatgcatacaacatacttaaatatttgatgaaactttgtttt 29108947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 28200136 - 28200045
Alignment:
Q  3 ggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatac 94  Q
    |||| ||||| ||| ||||||||  ||| |||||||||| ||||       |||||||| ||||||||||||||||||| ||||||||||||    
T  28200136 ggttcggatcggttcggttgatcggtttatttgaaaatagaattaaaaaagttcatattctcacaaatttgtatttcatacatacaacatac 28200045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 30340901 - 30340862
Alignment:
Q  55 tcatattttcacaaatttgtatttcatgcatacaacatac 94  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  30340901 tcatattctcacaaagttgtatttcatgcatacaacatac 30340862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 3689542 - 3689579
Alignment:
Q  9 gatcagtttggttgatcattttgtttgaaaatacaatt 46  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  3689542 gatcggtttggttgatcagtttgtttgaaaatacaatt 3689579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 25544833 - 25545031
Alignment:
Q  22 gatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttc 121  Q
    ||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  25544833 gatcagtttgtttgaaaatacaattaaaaaa-ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcataaaactttgttttt 25544931  T
Q  122 catgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat---taatcccaacgattgtgacgaacgatggattaggtgtg 217  Q
    |||||| |  | |||||| | ||||||||||||||||| ||||||||||||| ||||||     ||||||||||  |||| ||||||||| |||||||||    
T  25544932 catgttgtttgtttttcaaactactttgtataactaacatgaaaaaactaacgagagatggacgatcccaacgacggtgaggaacgatgggttaggtgtg 25545031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 31136666 - 31136543
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtata 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||   |||||| | |||||||||||    
T  31136666 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgtttttcttgttctctatttttcaaactactttgtata 31136567  T
Q  153 actaacctgaaaaaactaacaaga 176  Q
    |||  | |||||||||||||||||    
T  31136566 acttgcatgaaaaaactaacaaga 31136543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 45595906 - 45595739
Alignment:
Q  3 ggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatat 102  Q
    ||||||| || ||||||||||||  |||| ||||||||||||||       || ||||||||||||||||||| ||||||  |||||||||||||||||     
T  45595906 ggtttggttcggtttggttgatcggtttggttgaaaatacaattaaaaaa-ttaatattttcacaaatttgtacttcatgtctacaacatactcaaata- 45595809  T
Q  103 ttcatagaactttgttttccatgttctc-cgttttcataatactttgtataactaacctgaaaaaactaa 171  Q
    |||||||||||||||||||||||||||| | |||||| | |||||||||||| |||| ||||||||||||    
T  45595808 ttcatagaactttgttttccatgttctctcattttcaaactactttgtataattaacatgaaaaaactaa 45595739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 12470682 - 12470804
Alignment:
Q  56 catattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataac 154  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||||| | |||| | | |||||||||||||    
T  12470682 catattttcacaaatttgtatttcatccatacaacatactcaaatatttcttataactttgctttccatgttctctgttttttaaactactttgtataac 12470781  T
Q  155 taacctg-aaaaaactaacaaga 176  Q
    |||| || |||||||||||||||    
T  12470782 taacatgaaaaaaactaacaaga 12470804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 49124765 - 49124615
Alignment:
Q  28 tttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgtt 127  Q
    |||||||||||||||||||       | |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| |||| |    
T  49124765 tttgtttgaaaatacaattacaaaaatccatattttcacaaatttgcatttcatgcatacaacatattcaaatatttcatggaacttcgtttttcatgct 49124666  T
Q  128 ctc--cgttttcataatactttgtataactaacctgaaaaaactaacaaga 176  Q
    |||    |||||| | ||||||||||||||||| |||||||||||||||||    
T  49124665 ctctattttttcaaactactttgtataactaacatgaaaaaactaacaaga 49124615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 12471396 - 12471517
Alignment:
Q  56 catattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataac 154  Q
    |||||||||| |||||| ||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||  | |||| | | |||||||||||||    
T  12471396 catattttcagaaatttatatttcatgtatacaacacactcaaatatttcttataactttgttttccatgttctatgttttttaaattactttgtataac 12471495  T
Q  155 taacctgaaaaaactaacaaga 176  Q
    |||| |||||||||||||||||    
T  12471496 taacatgaaaaaactaacaaga 12471517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 2500726 - 2500899
Alignment:
Q  6 ttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaat-ttgtatttcatgcatacaacatactcaaatattt 104  Q
    ||||||| ||||||||||||  ||||||||||||| |||||       |||||||||||| |||  |||   ||||||||||||||||||||||||||||    
T  2500726 ttggatcggtttggttgatcggtttgtttgaaaatgcaattaaaaaa-ttcatattttcataaaaattgggattcatgcatacaacatactcaaatattt 2500824  T
Q  105 catagaactttgttttccatgttctccgttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    || | ||| |||||||||||||||   |||||   ||||||||||||||||||| ||||||||||||||||||||    
T  2500825 cacaaaacattgttttccatgttcattgtttttcaaatactttgtataactaacatgaaaaaactaacaagagat 2500899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 39571460 - 39571583
Alignment:
Q  55 tcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataa 153  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||| ||||||||| |||||| |||||||||||||  | ||||||   ||||||||||||    
T  39571460 tcatatttttacaaatttgtatttcatgcttacaaca-actcaagtatttcatataactttattttccatgttctttgtttttcaatctactttgtataa 39571558  T
Q  154 ctaacctgaaaaaactaacaagagat 179  Q
    ||||| | ||||||||||||||||||    
T  39571559 ctaacat-aaaaaactaacaagagat 39571583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 48071134 - 48071018
Alignment:
Q  56 catattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataac 154  Q
    |||||||||||||||||||||||||| || || ||||| |||||||||| ||||||||||||||||||| || || | |||||| ||||||||||||||     
T  48071134 catattttcacaaatttgtatttcatacacactacataatcaaatattt-atagaactttgttttccatattatctgtttttcaaaatactttgtataat 48071036  T
Q  155 taacctgaaaaaactaac 172  Q
    |||| |||||| ||||||    
T  48071035 taacatgaaaatactaac 48071018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 22331465 - 22331576
Alignment:
Q  4 gtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatt 103  Q
    ||||||||| ||| ||||||| |||  ||||||||||||||||       ||| |||| ||| ||||||| ||||||  |||||||||||||||||||||    
T  22331465 gtttggatcggttcggttgatgatt--gtttgaaaatacaattaaaaaaattcgtattctcataaatttgcatttcaatcatacaacatactcaaatatt 22331562  T
Q  104 tcatagaactttgt 117  Q
    | || || ||||||    
T  22331563 ttattgatctttgt 22331576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 19601804 - 19601869
Alignment:
Q  20 ttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcat 85  Q
    ||||||| |||| ||||||||||||||       |||||||| |||||||||||||||||||||||    
T  19601804 ttgatcagtttgcttgaaaatacaattaaaaaaattcatattgtcacaaatttgtatttcatgcat 19601869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 27226573 - 27226607
Alignment:
Q  60 ttttcacaaatttgtatttcatgcatacaacatac 94  Q
    |||||||||||||||| ||||||||||||||||||    
T  27226573 ttttcacaaatttgtacttcatgcatacaacatac 27226607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 46264897 - 46264938
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatact 95  Q
    |||| ||| |||||||||||||||||||||||| ||||||||    
T  46264897 ttcacattctcacaaatttgtatttcatgcataaaacatact 46264938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 30396835 - 30396803
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcata 86  Q
    |||||||| ||||||||||||||||||||||||    
T  30396835 ttcatattctcacaaatttgtatttcatgcata 30396803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 3767317 - 3767443
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtata 152  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| | |||||| | || ||||||||    
T  3767317 ttcatattttcacaaatttgtatttcatgcatacaacttactcaaatatttcatagaactttgttttctgtgttctctgtttttcaaactattttgtata 3767416  T
Q  153 actaacctgaaaaaactaacaagagat 179  Q
    |||||| ||||||||||||||||||||    
T  3767417 actaacatgaaaaaactaacaagagat 3767443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 20860005 - 20860163
Alignment:
Q  22 gatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttc 121  Q
    ||||| || ||||||||||||||||       | |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  20860005 gatcagttcgtttgaaaatacaattaaaaaaatccatattttcacaaatttgtatttcatgcttacatcatactcaaatatttcatagaactttgttttc 20860104  T
Q  122 catgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||||||||  | |||||| | ||||||||||||||||| |||||||||||||| |||||    
T  20860105 catgttctttgtttttcaaactactttgtataactaacatgaaaaaactaacacgagat 20860163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 9505557 - 9505390
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtata 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||  | |||||| | |||||||||||    
T  9505557 ttcatattttcacaaatttgtatttcatgtatacaacatactcaaatatttcatagaactttgtttttcatgttctatgtttttcaaactactttgtata 9505458  T
Q  153 actaacctgaaaaaactaacaagagatta---atcccaacgattgtgacgaacgatggattaggtgtg 217  Q
    | ||||  ||||||||||||| ||||| |   |||||| |||  |||| ||||||| |||||||||||    
T  9505457 attaacaggaaaaaactaacatgagataaaggatcccatcgacggtgaggaacgatagattaggtgtg 9505390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 32322325 - 32322202
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataact 155  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||| | |||||| | ||||||||||||||    
T  32322325 atattttcacaaatttgtttttcatgcatacaacatactcaaatatttaatataactttattttccacgttctctgtttttcaaactactttgtataact 32322226  T
Q  156 aacctgaaaaaactaacaagagat 179  Q
    ||| |||||||| |||||||||||    
T  32322225 aacatgaaaaaaataacaagagat 32322202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 3555022 - 3555196
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttc-atattttcacaaatttgtatttcatgcatacaacatactcaaa 99  Q
    |||||||||||| ||| ||||||||  |||||||||||||||||||        || ||||||||| |||||||||||| |||||| ||||||||| |||    
T  3555022 tcggtttggatcggttcggttgatcggtttgtttgaaaatacaattaaaaaaaatccatattttcataaatttgtattttatgcatgcaacatactgaaa 3555121  T
Q  100 tatttcatagaactttgttttccatgttctccgttttcataatactttgtataactaacctgaaaaaactaacaa 174  Q
    ||||||||  ||||||||||||  |||||||  |||||| | | ||||||||||||||| |||||||| ||||||    
T  3555122 tatttcatgaaactttgttttcattgttctcttttttcaaactgctttgtataactaacatgaaaaaattaacaa 3555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 17913265 - 17913157
Alignment:
Q  61 tttcacaaattt-gtatttcatgcatacaa-catactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtataactaa 157  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||   |||||| | ||||||||||||||||    
T  17913265 tttcacaaattttgtatt-catgcatacaaacatactcaaatatttcatagtactttgttttccatgttctctatttttcaaactactttgtataactaa 17913167  T
Q  158 cctgaaaaaa 167  Q
    | ||||||||    
T  17913166 catgaaaaaa 17913157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 42614782 - 42614855
Alignment:
Q  56 catattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttct 129  Q
    |||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||    
T  42614782 cataatttcataaatttgcatttcatgcattcaacatactcaagtatttcatagaactttgttttccatattct 42614855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 25343624 - 25343718
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnn-ttcatattttcacaaatttgtatttcatgcatacaacatac 94  Q
    |||||||||||| ||| ||||||||  ||| ||||||||||| |||        |||||||| |||||||||||||||||||||||| |||||||    
T  25343624 tcggtttggatcggttcggttgatcggtttatttgaaaatactattaaaaaaaattcatattctcacaaatttgtatttcatgcataaaacatac 25343718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 25654374 - 25654468
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnn-ttcatattttcacaaatttgtatttcatgcatacaacatac 94  Q
    |||||||||||| ||| ||||||||  ||| ||||||||||| |||        |||||||| |||||||||||||||||||||||| |||||||    
T  25654374 tcggtttggatcggttcggttgatcggtttatttgaaaatactattaaaaaaaattcatattctcacaaatttgtatttcatgcataaaacatac 25654468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 40434637 - 40434673
Alignment:
Q  83 catacaacatactcaaatatttcatagaactttgttt 119  Q
    |||||||||||||||||||| |||| |||||||||||    
T  40434637 catacaacatactcaaatatatcatggaactttgttt 40434673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 42141802 - 42141645
Alignment:
Q  14 gtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaact 113  Q
    ||||||||||||  |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  42141802 gtttggttgatcggtttgtttgaaaatacaattaaaaaaattcatattttcacaaatttgtatttcatgcatacaac--actgaaatatttcatagaact 42141705  T
Q  114 ttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaac 172  Q
    ||||||| |||||| || | |||||| | ||||||||||||||||| |||||||||||||    
T  42141704 ttgttttacatgttatctgtttttcaaactactttgtataactaacatgaaaaaactaac 42141645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 53392806 - 53392928
Alignment:
Q  58 tattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataacta 156  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||| ||||    
T  53392806 tattctcacaaatttgtatttcatgcatacaacatattcaaatatttcatagaactttattttccatgttctctgtttttcaaaatactttgtattacta 53392905  T
Q  157 acctgaaaaaactaacaagagat 179  Q
    || |||||||| |||||||||||    
T  53392906 acatgaaaaaattaacaagagat 53392928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 19681728 - 19681852
Alignment:
Q  56 catattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtataac 154  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||||||||   |||||| | |||||||||||||    
T  19681728 catattttcacaaatttgtatttcacgcatacaacgtactcaaatatttcataaaactttggtttccatgttctctatttttcaaactactttgtataac 19681827  T
Q  155 taacctgaaaaaactaacaagagat 179  Q
    |||| |||||||||||| |||||||    
T  19681828 taacatgaaaaaactaaaaagagat 19681852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 9140620 - 9140799
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaat 100  Q
    |||||||||||||||| |||||| |  ||||||||||| |||||||       |  ||||||||| |||||||||||||| |||||||||||||||||||    
T  9140620 tcggtttggatcagttcggttgaccggtttgtttgaaattacaattaaaaaaatctatattttcaaaaatttgtatttcaagcatacaacatactcaaat 9140719  T
Q  101 atttcatagaactttgttttccatgttctc-cgttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||||||||||||||| ||||| ||||| ||   |||||| | |||||||| |||||||| | ||||||||||||||||||    
T  9140720 atttcatagaactttattttctatgttatctatttttcaaactactttgtgtaactaacataaaaaaactaacaagagat 9140799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 13207050 - 13207159
Alignment:
Q  58 tattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtataacta 156  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||| |   |||||| |  ||||||||||||||    
T  13207050 tattttcacatatttgtatttcatgcatacaacatacttaaatatttcatggagctttgttttccacgttccctatttttcaaacaactttgtataacta 13207149  T
Q  157 acctgaaaaa 166  Q
    || |||||||    
T  13207150 acatgaaaaa 13207159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 39838863 - 39838945
Alignment:
Q  28 tttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcataga 110  Q
    |||||||||||||||||||       || | |||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  39838863 tttgtttgaaaatacaattaaaaaaatttaaattttcacaaatttgtatttcatatatacaacataatcaaatatttcataga 39838945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 3042118 - 3042047
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttct 129  Q
    ||||||| ||||||||||||||| |  |||||||||||||||||||||||| ||| |||||||| ||| ||||    
T  3042118 atatttttacaaatttgtatttc-tatatacaacatactcaaatatttcatggaaatttgtttttcatattct 3042047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 8605784 - 8605824
Alignment:
Q  55 tcatattttcacaaatttgtatttcatgcatacaacatact 95  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  8605784 tcatattcttacaaatttgtatttcatgcatacaacatact 8605824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 13981508 - 13981467
Alignment:
Q  54 ttcatattttcacaaattt-gtatttcatgcatacaacatac 94  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  13981508 ttcatattttcacaaattttgtatttaatgcatacaacatac 13981467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 3042175 - 3042132
Alignment:
Q  2 cggtttggatcagtttggttgatcattttgtttgaaaatacaatt 46  Q
    |||||| |||||||||||||||||  |||||||||||||||||||    
T  3042175 cggtttagatcagtttggttgatc-gtttgtttgaaaatacaatt 3042132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 38388520 - 38388484
Alignment:
Q  58 tattttcacaaatttgtatttcatgcatacaacatac 94  Q
    |||| |||||||||||||||||||||||| |||||||    
T  38388520 tattctcacaaatttgtatttcatgcataaaacatac 38388484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 32678060 - 32678240
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaa-catactcaaa 99  Q
    |||||||||||| ||||||||||||  ||||||  |||||||||||       |  ||||||||| ||||||||||||||||||||||| ||| ||||||    
T  32678060 tcggtttggatcggtttggttgatcgatttgttctaaaatacaattaaaaaaatctatattttcataaatttgtatttcatgcatacaaacatgctcaaa 32678159  T
Q  100 tatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||||||||||||||||||||| ||||||||| | |||||  | ||||||||||||||||| |||||||||||| |||||||    
T  32678160 tatttcatagaactttgtttttcatgttctctgtttttcgaactactttgtataactaacatgaaaaaactaataagagat 32678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 8414209 - 8414334
Alignment:
Q  56 catattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtataac 154  Q
    |||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||| |||   |||||| |||||||| || |||    
T  8414209 catattttcacaaatttgtatttcatacatacaacatgttcaaatatttcatagaactttgtttttcatgtactctatttttcaaaatactttttacaac 8414308  T
Q  155 taacctgaaaaaactaacaagagatt 180  Q
    |||| || ||||||||||||||||||    
T  8414309 taacatggaaaaactaacaagagatt 8414334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 11912096 - 11911993
Alignment:
Q  56 catattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataac 154  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||| | |||||| | ||||||||| |||    
T  11912096 catattttcacaaatttgtatttcatgcatacaacatattcaagtatttcatagaactttattttccatgttctctgtttttcaaactactttgtaaaac 11911997  T
Q  155 taac 158  Q
    ||||    
T  11911996 taac 11911993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 27320086 - 27320256
Alignment:
Q  4 gtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttc-atattttcacaaatttgtatttcatgcatacaacatactcaaatat 102  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||        || || ||||||| || |||||||| ||| |||||||||||||||||||    
T  27320086 gtttggatcggttcggttgatcggtttgtttgaaaatacaattaaaagaaatctattttttcactaaattgtattt-atgtatacaacatactcaaatat 27320184  T
Q  103 ttcatagaactttgttttccatgttctccgttttcataat--actttgtataactaacctgaaaaaactaac 172  Q
    ||||| |||||||||||| || |||||| ||||||  ||   |||||||||||||||| |||||||||||||    
T  27320185 ttcatggaactttgtttttcaagttctctgttttctcaaacaactttgtataactaacatgaaaaaactaac 27320256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4407260 - 4407353
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatac 94  Q
    |||||||||||||||| ||||||||| ||| |||||||||||||||       |||||||| ||||||| || |||||||||||||||||||||    
T  4407260 tcggtttggatcagttcggttgatcagtttatttgaaaatacaattaaaaaatttcatattctcacaaacttatatttcatgcatacaacatac 4407353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 17531126 - 17531007
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtata 152  Q
    |||||||||| ||| |||||||||||||| |||||| |||||||||||       |||||||||||||||||||||  | |||||| | |||| ||||||    
T  17531126 ttcatatttttacagatttgtatttcatgtatacaatatactcaaata-------gaactttgttttccatgttctatgtttttcaaactactatgtata 17531034  T
Q  153 actaacctgaaaaaactaacaagagat 179  Q
    | |||| |||||||||||||| |||||    
T  17531033 attaacatgaaaaaactaacatgagat 17531007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 4635009 - 4635121
Alignment:
Q  14 gtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaact 113  Q
    ||||||||||||| |||||||||||  ||||||       |  ||||||| || ||||||| |||||| | ||||||||||||||||||||||   ||||    
T  4635009 gtttggttgatcagtttgtttgaaagaacaattaaaaaaatctatatttttacgaatttgtgtttcattcctacaacatactcaaatatttca---aact 4635105  T
Q  114 ttgttttccatgttct 129  Q
    || |||||||||||||    
T  4635106 ttattttccatgttct 4635121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 42616330 - 42616408
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccgtttt 136  Q
    ||||||||| ||||||||||||||||| |  |||||| ||||| ||||||| ||||||||  |||||||||||| |||||    
T  42616330 atattttcataaatttgtatttcatgcttgtaacatattcaaacatttcatggaactttg-attccatgttctctgtttt 42616408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 48640864 - 48640907
Alignment:
Q  65 acaaatttgtatttcatgcatacaacatactcaaatatttcata 108  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  48640864 acaaatttgtgtttcatgcatacaacatactcaaacatttcata 48640907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 6871 - 6693
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaat 100  Q
    |||||||||||| ||| ||||||||  |||||||||||||||||||       | ||||||||||||||||| ||||||| || ||||||||||| ||||    
T  6871 tcggtttggatcggttcggttgatcgatttgtttgaaaatacaattaaaaaaatccatattttcacaaatttatatttcacgcgtacaacatactgaaat 6772  T
Q  101 atttcatagaactttgttttccatgttctccgttt-tcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    | |||||||||||||||||||||||||||  |||| ||| | ||| ||||||||||||| ||||||||| ||||||||||    
T  6771 acttcatagaactttgttttccatgttctatgtttatcaaactac-ttgtataactaacatgaaaaaacgaacaagagat 6693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 1497799 - 1497977
Alignment:
Q  1 tcggtttggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatactcaaat 100  Q
    |||||||||||| ||| ||||||||  ||||||||||||||||||        | ||||||||||||||||||| ||||||  |||||||||||||||||    
T  1497799 tcggtttggatcggttcggttgatcggtttgtttgaaaatacaataaaaaaaat-catattttcacaaatttgtgtttcatctatacaacatactcaaat 1497897  T
Q  101 atttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    |||||||||||||||||||||||| ||||| | |||||| | |||||| |||||||||  |||||||||||| |||||||    
T  1497898 atttcatagaactttgttttccatattctctgtttttcaaactactttttataactaatatgaaaaaactaaaaagagat 1497977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 20665853 - 20665743
Alignment:
Q  58 tattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtataacta 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| | ||||||||| |||||    
T  20665853 tattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctcaatttttcaaactactttgtacaacta 20665754  T
Q  157 acctgaaaaaa 167  Q
    || ||||||||    
T  20665753 acatgaaaaaa 20665743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 7238950 - 7239078
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaa-catactcaaatatttcatagaactttgttttccatgttctccg--ttttcataatactttgta 150  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |  |||||| | |||||| ||    
T  7238950 ttcatattttaacaaatttgtatttcatgcatacaaacatactcaaatatttcatagaactttgttttctaggttctctgttttttcaaactactttcta 7239049  T
Q  151 taactaacctgaaaaaactaacaagagat 179  Q
    |||||||| ||||||||||||||||||||    
T  7239050 taactaacatgaaaaaactaacaagagat 7239078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 7244126 - 7244254
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaa-catactcaaatatttcatagaactttgttttccatgttctccg--ttttcataatactttgta 150  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |  |||||| | |||||| ||    
T  7244126 ttcatattttaacaaatttgtatttcatgcatacaaacatactcaaatatttcatagaactttgttttctaggttctctgttttttcaaactactttcta 7244225  T
Q  151 taactaacctgaaaaaactaacaagagat 179  Q
    |||||||| ||||||||||||||||||||    
T  7244226 taactaacatgaaaaaactaacaagagat 7244254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 17770710 - 17770638
Alignment:
Q  55 tcatattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttc 128  Q
    |||||||||||||||||||||| |||| ||| ||||||| |||||||||| || |||||| | |||||||||||    
T  17770710 tcatattttcacaaatttgtatatcatacatgcaacatattcaaatattttatggaacttag-tttccatgttc 17770638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 29126767 - 29126679
Alignment:
Q  7 tggatcagtttggttgatcattttgtttgaaaatacaattnnnnnnnttcatattttcacaaatttgtatttcatgcatacaacatact 95  Q
    ||||||| |||||||||||  |||||||||||||||||||       || ||||| ||||||||||| |||| ||| ||||||||||||    
T  29126767 tggatcaatttggttgatcggtttgtttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatgtatacaacatact 29126679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 42307077 - 42307035
Alignment:
Q  57 atattttcacaaatttgtatttcatgcatacaacatactcaaa 99  Q
    ||||| |||| || |||||||||||||||||||||||||||||    
T  42307077 atattctcacgaaattgtatttcatgcatacaacatactcaaa 42307035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 8676 - 8564
Alignment:
Q  68 aatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctccg-ttttcataatactttgtataactaacctgaaaaa 166  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || ||| | |||||||| |||||||| |||||||    
T  8676 aatttgcatttcatgcatacaccatactcaaatatttcatagaactttgttttccatgttctctgcttctcaaactactttgtgtaactaacgtgaaaaa 8577  T
Q  167 actaacaagagat 179  Q
    |||||||||||||    
T  8576 actaacaagagat 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 2206 - 2330
Alignment:
Q  56 catattttcacaaatttgtatttcatgcatacaacatactcaaatatttcatagaactttgttttccatgttctc-cgttttcataatactttgtataac 154  Q
    |||||||||||||||||||||||| |  |||||||||| ||||||||||| ||||||| ||||   ||||||| |   |||||| | |||||||||||||    
T  2206 catattttcacaaatttgtatttcttatatacaacatattcaaatatttcgtagaactctgttcgtcatgttcactatttttcaaactactttgtataac 2305  T
Q  155 taacctgaaaaaactaacaagagat 179  Q
    |||  ||||||||||||||| ||||    
T  2306 taaaatgaaaaaactaacaaaagat 2330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 344063 - 344137
Alignment:
Q  105 catagaactttgttttccatgttctccgttttcataatactttgtataactaacctgaaaaaactaacaagagat 179  Q
    ||||||| ||||||||||||||||||  |||| | |||| |||| ||||||||| ||||||||||||||||||||    
T  344063 catagaaatttgttttccatgttctctatttttaaaatattttgaataactaacatgaaaaaactaacaagagat 344137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 34301 - 34261
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatac 94  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  34301 ttcatattctcacaaatttgtatttcatgcataaaacatac 34261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 14351 - 14311
Alignment:
Q  54 ttcatattttcacaaatttgtatttcatgcatacaacatac 94  Q
    |||||||| |||||||| ||||||||||||||| |||||||    
T  14351 ttcatattctcacaaatctgtatttcatgcataaaacatac 14311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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