View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_63 (Length: 239)
Name: NF9311_low_63
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 21559216 - 21559422
Alignment:
| Q |
22 |
gtgacgagcgacagaagaagtgctgttttgtttgatgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaatt |
121 |
Q |
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| T |
21559216 |
gtgacgagcgacagaagaagtgctgttttgtttgatgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaatt |
21559315 |
T |
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| Q |
122 |
gttgaaagatttgtagtcccactcctgcatataaacctcttcttactgttttggttttcaaaagtttgataatgctgactttgttggaagatgaatcgtc |
221 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
21559316 |
gttggaagatttgtagtcccactcctgcatataaacctcttctaactgttttggttttcaaaagtttgattatgctgactttgttggaagacgaatcgtc |
21559415 |
T |
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| Q |
222 |
tctgctt |
228 |
Q |
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| ||||| |
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| T |
21559416 |
tttgctt |
21559422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 21492540 - 21492673
Alignment:
| Q |
31 |
gacagaagaagtgctgttttgtttgatgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaattgttgaaaga |
130 |
Q |
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| T |
21492540 |
gacagaagaagtgctgttctttttgacgcaaaaccggccagctgaacaattgaaggactgtagtacattaccgtgttgataccggtaaattgctggaaaa |
21492639 |
T |
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| Q |
131 |
tttgtagtcccactcctgcatataaacctcttct |
164 |
Q |
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| T |
21492640 |
acgcaagtcctacacctgcatataaacctcttct |
21492673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 33116286 - 33116177
Alignment:
| Q |
55 |
gatgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaattgttgaaagatttgtagtcccactcctgcatata |
154 |
Q |
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||||||||||||||||||||||| || ||||| ||| |||||||||| || |||||||| ||||||||||| || ||||| || |||| ||||||||| | |
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| T |
33116286 |
gatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcataca |
33116187 |
T |
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| Q |
155 |
aacctcttct |
164 |
Q |
| |
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|||||||||| |
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| T |
33116186 |
aacctcttct |
33116177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 33119464 - 33119309
Alignment:
| Q |
31 |
gacagaagaagtgctgttttgtttgatgcaaaaccagctagttgaacgatggttggactgtagta-----cattactgtgttgattccgacaaattgttg |
125 |
Q |
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|||||||||||||| |||| || ||||||||||| |||| |||| |||| |||||||||||| ||| || ||||||||||| ||||||||||| |
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| T |
33119464 |
gacagaagaagtgccgtttgattggatgcaaaaccggctaactgaataatggctggactgtagtatagtacatgacagtgttgattccaacaaattgttg |
33119365 |
T |
|
| Q |
126 |
aaagatttgtagtcccactcctgcatataaacctcttcttactgttttggttttca |
181 |
Q |
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|| ||| ||||||| |||||||||||||||||| |||| | ||||||||||| |
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| T |
33119364 |
gaaaattgcaagtcccattcctgcatataaacctctccttatagctttggttttca |
33119309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 1084126 - 1084235
Alignment:
| Q |
55 |
gatgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaattgttgaaagatttgtagtcccactcctgcatata |
154 |
Q |
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||||||||||||||||||||||| || ||||| ||| |||||||||| | |||||||| ||||||||||| || ||||| || |||| ||||||||| | |
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| T |
1084126 |
gatgcaaaaccagctagttgaacaatagttgggctgaagtacattacgatattgattcctacaaattgttggaatatttgaaggcccattcctgcataca |
1084225 |
T |
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| Q |
155 |
aacctcttct |
164 |
Q |
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|||||||||| |
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| T |
1084226 |
aacctcttct |
1084235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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