View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_66 (Length: 237)
Name: NF9311_low_66
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4785850 - 4786085
Alignment:
| Q |
1 |
aaagtcctcctcttcccctattctccatttctcgccaaactcttgatattttttcaacatttcaccacaaacttttgttaaatagttggctcaacagtca |
100 |
Q |
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| T |
4785850 |
aaagtcctcctcttcccctattctccatttctcgccaaactcttgatattttttcaacatttcaccacaaacttttgttaaatagttggctcaacagtca |
4785949 |
T |
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| Q |
101 |
actctgttaagaagccacacaacaagagtaa---------atccttaaaatcatttgaattgtctccttaaaaagatttagcgtttggataaaacaagg- |
190 |
Q |
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| T |
4785950 |
actctgttaagaagccacacaacaagagtaaacactaattatccttaaaatcatttgaattgtctccttaaaaagatttagcgtttggataaaacaagga |
4786049 |
T |
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| Q |
191 |
---ataggagcatatatcactcacgaaggatcaaac |
223 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4786050 |
tatataggagcatatatcactcacgaaggatcaaac |
4786085 |
T |
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