View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_7 (Length: 509)
Name: NF9311_low_7
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 116 - 491
Target Start/End: Complemental strand, 1402084 - 1401712
Alignment:
| Q |
116 |
gagaactaccaacggattcgtagttttaggataaatatgtccagcaccccctgacgctagtaaagtcgccttcgaaagaaatcttaccacctnnnnnnnn |
215 |
Q |
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| T |
1402084 |
gagaactaccaacggattcgtagttttaggataaatatgtccagcaccccctgacgctagtaaagtcgccttcgaaagaaatcttaccacctaaaaaagc |
1401985 |
T |
|
| Q |
216 |
nnnnnnngattaaagattagaaaatatattcaatgatggccgtaatttaggtctcaaacaatcacacataattgcttttcccacctctagagtttcagta |
315 |
Q |
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| T |
1401984 |
taaaaaagattaaagattagaaaatatattcaatgatggccgtaatttaggtctcaaacaatcacacataattgcttttcccacctctagagtttcagta |
1401885 |
T |
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| Q |
316 |
ttaagtgtgtcaacaccaagacaggttatatcagatccatcctgcaacaccagcaacatgtttcatcagttagcaaatgcatcaaaactttcaaaatgtt |
415 |
Q |
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| T |
1401884 |
ttaagtgtgtcaacaccaagacaggttatatcagatccatcctgcaacaccagcaacatgtt---tcagttagcaaatgcatcaaaactttcaaaatgtt |
1401788 |
T |
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| Q |
416 |
cgtcaaatttttctgagatgtcaaaacaattttatgccatcaacattatgtgctaagaaaatcttaggaatactaa |
491 |
Q |
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| T |
1401787 |
cgtcaaatttttctgagatgtcaaaacaattttatgccatcaacattatgtgctaagaaaatcttaggaatactaa |
1401712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 1402191 - 1402148
Alignment:
| Q |
9 |
tagattattctatttttcatcatgattcgtgttattaaatacct |
52 |
Q |
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| T |
1402191 |
tagattattctatttttcatcatgattcgtgttattaaatacct |
1402148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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