View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_71 (Length: 221)
Name: NF9311_low_71
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 23386567 - 23386749
Alignment:
| Q |
19 |
cttttgcccttcttttaacgattccaatgcattattgcagaacatatccatggtatgaggtgttatgaggggaagttcttatatatgtggcagactgcaa |
118 |
Q |
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| T |
23386567 |
cttttgcccttctttaaacgattccaatgcattattgcagaacatatccatggtatgaggtgttatgaggggaagttcttatatatgtggcagactgcaa |
23386666 |
T |
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| Q |
119 |
cagaatccaataactcctgaaccccaccttaaataataatatgacgacattatcttatatatacataatatcgcatcctaact |
201 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386667 |
cagaatccaataacccctgaaccccaccttaaataataatatgacgacattatcttatatatacataatatcgcatcctaact |
23386749 |
T |
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