View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_79 (Length: 211)
Name: NF9311_low_79
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
| Q |
75 |
aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc |
174 |
Q |
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| T |
28533069 |
aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc |
28533168 |
T |
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| Q |
175 |
tgaatatacattcccaaca |
193 |
Q |
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| T |
28533169 |
tgaagatacattcccaaca |
28533187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28532953 - 28533029
Alignment:
| Q |
1 |
cgtcgaggttgtgaccgagatagcgagagagattgagggaattgagatgggtgaaccttttgaagaggctacgtagg |
77 |
Q |
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| T |
28532953 |
cgtcgaggttgttacctagatagcgagagagatcgaggaaattgagatgggtgaaccttttgaagaggctaagtagg |
28533029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
| Q |
83 |
ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata |
182 |
Q |
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| T |
51763191 |
ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata |
51763092 |
T |
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| Q |
183 |
cattcccaaca |
193 |
Q |
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| T |
51763091 |
gattcccaaca |
51763081 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
| Q |
77 |
gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc |
151 |
Q |
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| T |
6588056 |
gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc |
6587982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 14810035 - 14810081
Alignment:
| Q |
161 |
gttgatgatgaatctgaatatacattcccaacactcatcaggtaaat |
207 |
Q |
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| T |
14810035 |
gttgatgatgaatctaaagacacgttcccaacactcatcaggtaaat |
14810081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 1537299 - 1537252
Alignment:
| Q |
160 |
cgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat |
207 |
Q |
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| T |
1537299 |
cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaat |
1537252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 53760058 - 53759964
Alignment:
| Q |
114 |
gagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaatctga |
211 |
Q |
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| T |
53760058 |
gagagagaattcaagttgtgacggttgttgtttttgtcctt---gttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaatctga |
53759964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 1547426 - 1547374
Alignment:
| Q |
155 |
accgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat |
207 |
Q |
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| T |
1547426 |
accgtcgatgatgatgaatttgaagatagattcccaacactcgtcaggtaaat |
1547374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 15091334 - 15091285
Alignment:
| Q |
158 |
gtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat |
207 |
Q |
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| T |
15091334 |
gtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaat |
15091285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 10167277 - 10167233
Alignment:
| Q |
167 |
gatgaatctgaatatacattcccaacactcatcaggtaaatctga |
211 |
Q |
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| T |
10167277 |
gatgaatctgaatatcaattcccaacattcgtcaggtaaatctga |
10167233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 10616213 - 10616245
Alignment:
| Q |
175 |
tgaatatacattcccaacactcatcaggtaaat |
207 |
Q |
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| T |
10616213 |
tgaagatacattcccaacactcatcaggtaaat |
10616245 |
T |
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