View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9311_low_8 (Length: 506)
Name: NF9311_low_8
Description: NF9311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9311_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 254 - 496
Target Start/End: Original strand, 12634989 - 12635231
Alignment:
| Q |
254 |
caatagcacacaatcacattacagaaattgaaagcataaatgaataagctaaagattaaagaatagaaaagnnnnnnnnngcaaatgatctaatctacat |
353 |
Q |
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| T |
12634989 |
caatagcacacaatcacattacagaaattgaaagcataaatgaataagctaaagattaaagaatagaaaagaaaaaaaaagcaaatgatctaatctacat |
12635088 |
T |
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| Q |
354 |
gaccatgtgtggtgtaaatcttactatgtaaaaagaagtaccttgctagttgatacacaatgccacaatgtgattcctgaaacatggtcacttacgatat |
453 |
Q |
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| T |
12635089 |
gaccatgtgtggtgtaaatcttactatgtaaaaagaagtaccttgctagttgatacacaatgccacaatgtgattcctgaaacatggtcacttacgatat |
12635188 |
T |
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| Q |
454 |
gagaagctgtcaaaattgattttatcaaaccattgttcctttg |
496 |
Q |
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| T |
12635189 |
gagaagctgtcaaaattgattttatcaaactattgttcctttg |
12635231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 12634755 - 12634915
Alignment:
| Q |
20 |
gtaactcacaccaatatatggtataagtccttgagctttttaagggtacacaaaaggaagggagactaaacttgaacaaattaaaagctcatgtgcaaag |
119 |
Q |
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| T |
12634755 |
gtaactcacaccaatatatggtataagtccttgagctttttaagggtacacaaaaggaagggagactaaacttgaacaaattaaaagctcatgtgcaaag |
12634854 |
T |
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| Q |
120 |
aaccttaacctcttactgccaatagttatatgcagaaaatatatagaaaatagccaagccc |
180 |
Q |
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| T |
12634855 |
aaccttaacctcttactgccaatagttatatgcagaaaatatatagaaaatagccaagccc |
12634915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 28941207 - 28941322
Alignment:
| Q |
32 |
aatatatggtataagtccttga-gctttttaagggtacacaaaaggaagggagactaaacttgaacaaattaaaagctcatgtgcaaagaaccttaacct |
130 |
Q |
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||||||||| || ||||||||| ||||||||||||| ||||||||||| ||||||| |||||||| | || |||||||||||||||||| | |
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| T |
28941207 |
aatatatggcatgagtccttgaagctttttaagggttcacaaaaggaaaaataactaaacatgaacaaaat-----cttgtgtgcaaagaaccttaacat |
28941301 |
T |
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| Q |
131 |
cttactgccaatagttatatg |
151 |
Q |
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| T |
28941302 |
cccactgccaatagttatatg |
28941322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 18918267 - 18918184
Alignment:
| Q |
53 |
agctttttaagggtacacaaaaggaagggagactaaacttgaacaaattaaaagctcatgtgcaaagaaccttaacctcttact |
136 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||| ||||||| |||| |
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| T |
18918267 |
agctttttaagggtacacaaaaggaagggtaactaaacttgaacatattagaagttcatgtgcaaagaaccgtaacctcctact |
18918184 |
T |
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