View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9312_low_1 (Length: 475)

Name: NF9312_low_1
Description: NF9312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9312_low_1
NF9312_low_1
[»] chr8 (11 HSPs)
chr8 (209-465)||(40902016-40902272)
chr8 (152-266)||(4558743-4558857)
chr8 (206-292)||(43504750-43504835)
chr8 (152-232)||(41620336-41620416)
chr8 (100-131)||(9956967-9956998)
chr8 (152-294)||(10114435-10114576)
chr8 (91-119)||(5404492-5404520)
chr8 (152-264)||(7714187-7714299)
chr8 (246-294)||(14280405-14280453)
chr8 (99-131)||(14956460-14956492)
chr8 (99-131)||(29819045-29819077)
[»] chr6 (17 HSPs)
chr6 (135-294)||(9093539-9093698)
chr6 (152-294)||(9559522-9559666)
chr6 (152-294)||(2735014-2735156)
chr6 (152-229)||(24476547-24476624)
chr6 (97-137)||(10645478-10645518)
chr6 (98-185)||(10728520-10728610)
chr6 (81-139)||(23063675-23063733)
chr6 (158-316)||(769090-769242)
chr6 (153-230)||(1402942-1403019)
chr6 (100-137)||(9632785-9632822)
chr6 (152-229)||(11340673-11340750)
chr6 (169-230)||(24838790-24838851)
chr6 (152-225)||(29274281-29274354)
chr6 (246-294)||(1575934-1575981)
chr6 (170-242)||(2112164-2112235)
chr6 (99-134)||(7946025-7946061)
chr6 (206-294)||(31624089-31624176)
[»] chr5 (9 HSPs)
chr5 (170-316)||(12425534-12425678)
chr5 (135-294)||(39105392-39105551)
chr5 (99-288)||(9202737-9202935)
chr5 (160-266)||(12595751-12595857)
chr5 (135-316)||(7674576-7674752)
chr5 (169-230)||(35550911-35550971)
chr5 (99-131)||(32372497-32372529)
chr5 (197-265)||(36542294-36542362)
chr5 (170-294)||(40119851-40119975)
[»] chr2 (25 HSPs)
chr2 (158-294)||(18066079-18066215)
chr2 (150-266)||(22681196-22681312)
chr2 (152-289)||(3611171-3611308)
chr2 (86-131)||(27695752-27695797)
chr2 (152-230)||(43199359-43199437)
chr2 (152-252)||(26143665-26143766)
chr2 (98-134)||(26626758-26626794)
chr2 (99-131)||(40279084-40279116)
chr2 (150-185)||(3932293-3932328)
chr2 (206-289)||(9174814-9174897)
chr2 (160-215)||(9395083-9395138)
chr2 (216-294)||(750679-750757)
chr2 (152-242)||(2416258-2416348)
chr2 (221-291)||(4606939-4607009)
chr2 (158-204)||(29288618-29288664)
chr2 (89-134)||(16451011-16451056)
chr2 (102-131)||(32592463-32592492)
chr2 (98-131)||(41460740-41460773)
chr2 (99-131)||(14220963-14220995)
chr2 (158-202)||(29288829-29288873)
chr2 (170-230)||(29300608-29300668)
chr2 (172-252)||(29316800-29316880)
chr2 (254-294)||(36043951-36043991)
chr2 (99-134)||(40158646-40158682)
chr2 (99-131)||(40835437-40835469)
[»] chr1 (21 HSPs)
chr1 (152-312)||(3887601-3887757)
chr1 (158-294)||(24915034-24915170)
chr1 (157-230)||(9656600-9656673)
chr1 (156-316)||(51695460-51695615)
chr1 (152-233)||(49517015-49517096)
chr1 (152-204)||(11211063-11211115)
chr1 (99-131)||(51190730-51190762)
chr1 (99-134)||(27820492-27820527)
chr1 (92-131)||(47498998-47499037)
chr1 (97-131)||(27970428-27970462)
chr1 (170-252)||(49888730-49888812)
chr1 (152-284)||(7069245-7069378)
chr1 (207-284)||(15784329-15784406)
chr1 (152-261)||(17269195-17269304)
chr1 (158-316)||(31517706-31517859)
chr1 (152-277)||(34952160-34952285)
chr1 (152-184)||(4777378-4777410)
chr1 (200-252)||(7137023-7137075)
chr1 (99-131)||(17727260-17727292)
chr1 (99-131)||(17834303-17834335)
chr1 (152-212)||(49557086-49557146)
[»] chr7 (19 HSPs)
chr7 (158-266)||(40688997-40689105)
chr7 (138-294)||(30535494-30535649)
chr7 (150-266)||(38010657-38010773)
chr7 (167-294)||(20526406-20526533)
chr7 (167-294)||(39967880-39968007)
chr7 (221-294)||(34035931-34036004)
chr7 (99-131)||(27863862-27863894)
chr7 (169-227)||(31002723-31002781)
chr7 (99-128)||(20258396-20258425)
chr7 (99-128)||(20269460-20269489)
chr7 (169-230)||(22759148-22759209)
chr7 (167-232)||(27548223-27548288)
chr7 (152-184)||(3968288-3968320)
chr7 (200-316)||(12110353-12110468)
chr7 (246-294)||(15740395-15740442)
chr7 (99-131)||(18865215-18865247)
chr7 (96-128)||(28900757-28900789)
chr7 (96-135)||(32156888-32156928)
chr7 (206-294)||(33678779-33678867)
[»] chr3 (21 HSPs)
chr3 (177-294)||(21367637-21367754)
chr3 (158-232)||(33405212-33405286)
chr3 (99-134)||(46886849-46886884)
chr3 (92-139)||(50946399-50946446)
chr3 (99-129)||(34235233-34235263)
chr3 (151-261)||(39602226-39602335)
chr3 (221-294)||(37389197-37389270)
chr3 (152-229)||(37788806-37788882)
chr3 (99-131)||(849555-849587)
chr3 (250-294)||(2175833-2175876)
chr3 (99-131)||(3846046-3846078)
chr3 (152-204)||(10101549-10101601)
chr3 (152-204)||(10212474-10212526)
chr3 (152-236)||(10357378-10357462)
chr3 (99-131)||(20003449-20003481)
chr3 (151-211)||(23785199-23785259)
chr3 (99-131)||(30365696-30365728)
chr3 (150-242)||(30956661-30956753)
chr3 (150-242)||(30972473-30972565)
chr3 (158-266)||(36783345-36783453)
chr3 (149-185)||(37689175-37689211)
[»] chr4 (17 HSPs)
chr4 (152-294)||(49803156-49803295)
chr4 (139-230)||(46859863-46859953)
chr4 (152-294)||(3155548-3155690)
chr4 (152-233)||(49219084-49219165)
chr4 (99-131)||(27330190-27330222)
chr4 (158-229)||(4071833-4071904)
chr4 (206-293)||(17822849-17822936)
chr4 (170-264)||(44319912-44320006)
chr4 (158-232)||(51630062-51630136)
chr4 (159-204)||(9509711-9509756)
chr4 (256-314)||(20719752-20719806)
chr4 (96-133)||(44248738-44248775)
chr4 (246-294)||(1965980-1966027)
chr4 (151-211)||(30024644-30024704)
chr4 (200-264)||(35571644-35571708)
chr4 (99-131)||(44863117-44863149)
chr4 (99-131)||(50681254-50681286)
[»] scaffold0549 (2 HSPs)
scaffold0549 (152-229)||(1772-1849)
scaffold0549 (152-229)||(3862-3939)
[»] scaffold0024 (1 HSPs)
scaffold0024 (152-232)||(27521-27601)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 209 - 465
Target Start/End: Complemental strand, 40902272 - 40902016
Alignment:
Q  209 taagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataattaagttcttccaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40902272 taagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataattaagttcttccaa 40902173  T
Q  309 acagtctctatatctctctctatacaactcatctacttatgcaaaaggaaaatctaactcaagttattgaacttgataatcaataatttcttaatttctc 408  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40902172 acagtctctatatctctctctataccactcatctacttatgcaaaaggaatatctaactcaagttattgaacttgataatcaataatttcttaatttctc 40902073  T
Q  409 aatttaaatgttaagaaacatgaaacaaacattgatcaaataaagcatatctctctg 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40902072 aatttaaatgttaagaaacatgaaacaaacattgatcaaataaagcatatctctctg 40902016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 4558743 - 4558857
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    ||||| |||||||| |  |||||||||||||||| | |||||| ||||||||  |||||||||| ||  |||||||||| |||||  |||| | ||||||    
T  4558743 ataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttatggaaataa 4558842  T
Q  252 gttaaaaacagctta 266  Q
      |||||||| ||||    
T  4558843 actaaaaacaactta 4558857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 43504750 - 43504835
Alignment:
Q  206 ctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcat 292  Q
    ||||||| || ||| |||||||||||| ||| ||||| | ||||||| | ||||||||||| |||||| ||| ||||||||||||||    
T  43504750 ctataagatgtttttataagctatcttggagaacttatggaaataagctgaaaacagcttataaacaa-gtcgtaagttgttttcat 43504835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 41620416 - 41620336
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatctt 232  Q
    ||||||||||| |  | |||||||||||||||||   |||||| |||||||| |||| |||||| ||| ||||||||||||    
T  41620416 ataagttatttttgtaacaaaagataaaataaagtcaaattatgttcatatattctaaaagctgtttttataagctatctt 41620336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 131
Target Start/End: Complemental strand, 9956998 - 9956967
Alignment:
Q  100 ttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||||||||||||||    
T  9956998 ttggataaacaacttatttgtagcttatagca 9956967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 10114435 - 10114576
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    ||||| |||||||| ||||||||||||||| ||| |||||| | ||  ||||| |||||||||| ||| || |||||| || ||| || || | ||||||    
T  10114435 ataagctatttctatagcaaaagataaaat-aagttgaattgttttggtataagctataagctgttttcattagctatattggagaacatatgaaaataa 10114533  T
Q  252 gttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    | | |||||||| ||  |  |||||  ||||||||||||||||    
T  10114534 gctgaaaacagcatatgataaatgttataagttgttttcataa 10114576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 5404492 - 5404520
Alignment:
Q  91 tggcactatttggataaacaacttatttg 119  Q
    |||||||||||||||||||||||||||||    
T  5404492 tggcactatttggataaacaacttatttg 5404520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 7714187 - 7714299
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    ||||||||  |||| | |||||||||||||||||||||  | | ||||||| | ||||||| || ||| || ||||||||| |||  || | | ||||||    
T  7714187 ataagttacatctataacaaaagataaaataaaggtgagctgttttcatatcaactataagttgttttcatgagctatcttggagagctcatgaaaataa 7714286  T
Q  252 gttaaaaacagct 264  Q
    ||| |||||||||    
T  7714287 gttgaaaacagct 7714299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 14280453 - 14280405
Alignment:
Q  246 aaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    ||||||| ||||||| |||||| ||||||||| ||| ||||||||||||    
T  14280453 aaataagctaaaaacggcttacgaacaatgtcataaattgttttcataa 14280405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 14956492 - 14956460
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||| |||||||||||    
T  14956492 tttggataaacaacttatttgcagcttatagca 14956460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 29819077 - 29819045
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||| |||||||||||    
T  29819077 tttggataaacaacttatttgcagcttatagca 29819045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 294
Target Start/End: Complemental strand, 9093698 - 9093539
Alignment:
Q  135 atgataagctcttacacataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttag 234  Q
    ||||||||| ||||   ||||| |||||||| | ||||||||||||||||| | |||| | ||| ||||| |||||||||| ||| ||||||| ||||||    
T  9093698 atgataagcgcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagctgtcttag 9093599  T
Q  235 agtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    || ||||||| ||||||| | ||||||| |||  ||||||||| |||| | |||||||||    
T  9093598 agaacttaagaaaataagctgaaaacaggttattaacaatgtcataagctattttcataa 9093539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 294
Target Start/End: Complemental strand, 9559666 - 9559522
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    |||||||||||||| ||||||||||||||||||  | |||| | ||| || || ||| || ||| ||| | ||||||||||  |  ||||| | ||||||    
T  9559666 ataagttatttctatagcaaaagataaaataaatttaaattgttttcgtagaaactacaaactgttttca-aagctatcttgaataacttatgaaaataa 9559568  T
Q  252 gttaaaaacagcttac---aaacaatgtcttaagttgttttcataa 294  Q
    ||| ||||||||||||    ||||||||| ||||||||||||||||    
T  9559567 gttgaaaacagcttacgcagaacaatgtcataagttgttttcataa 9559522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 2735014 - 2735156
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    ||||| ||| |||| | ||||||||||||||||| | |||||| ||  |||||||||||||||| ||| |||||| |||||  |  ||||| | ||||||    
T  2735014 ataagctatgtctataacaaaagataaaataaagttaaattatttttgtataatctataagctgttttcataagcaatcttgaacaacttatgaaaataa 2735113  T
Q  252 gttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |   |||||||||||  || |||||| ||||  ||||||||||    
T  2735114 gccgaaaacagcttatgaaaaatgtcataagccgttttcataa 2735156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 24476547 - 24476624
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctat 229  Q
    ||||| |||||||| |||||||||||||||  || | |||||| ||||||||| | |||||| | |||||||||||||    
T  24476547 ataagctatttctatagcaaaagataaaatgtagttaaattattttcatataagcgataagcagttttgataagctat 24476624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 10645518 - 10645478
Alignment:
Q  97 tatttggataaacaacttatttgtagcttatagcataaatg 137  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  10645518 tatttggataaacaacttatttgcagcttatagcacaaatg 10645478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 10728520 - 10728610
Alignment:
Q  98 atttggataaacaacttatttgtagcttatagcataaat---gataagctcttacacataagttatttctagagcaaaagataaaataaag 185  Q
    ||||||||||||||||||||||  |||||||||| ||||   ||| | | || |   |||||||||||||| |||||||||||||||||||    
T  10728520 atttggataaacaacttatttgatgcttatagcaaaaatcatgatgaacactcaagtataagttatttctaaagcaaaagataaaataaag 10728610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 23063733 - 23063675
Alignment:
Q  81 taatatactatggcactatttggataaacaacttatttgtagcttatagcataaatgat 139  Q
    |||||||||||||| || ||||||| | ||||||||||| | ||||||||| |||||||    
T  23063733 taatatactatggccctgtttggattatcaacttatttgcatcttatagcacaaatgat 23063675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 316
Target Start/End: Original strand, 769090 - 769242
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaa 257  Q
    |||||||| | |||||| |||||||||| | | || | ||  ||||| |||||| ||| ||| |||||||| ||| ||| ||||||| || |||||| ||    
T  769090 tatttctataacaaaagctaaaataaagttaatttttttttgtataagctataaactgttttcataagctaactt-gaggacttaagaaagtaagttgaa 769188  T
Q  258 aacagcttacaaacaatgtcttaagttgttttcataattaagttcttccaaacagtctc 316  Q
    |||||||||  ||| ||||| |||| ||||||||    ||||||| |||||||||||||    
T  769189 aacagcttatgaac-atgtcataagatgttttca----taagttcatccaaacagtctc 769242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 1402942 - 1403019
Alignment:
Q  153 taagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatc 230  Q
    |||| |||||||| | ||||||||||||||||| | || ||| ||||||||| ||||||  || ||| ||||||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctatc 1403019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 9632785 - 9632822
Alignment:
Q  100 ttggataaacaacttatttgtagcttatagcataaatg 137  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  9632785 ttggataaacaacttatttgcagcttatagcacaaatg 9632822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 11340750 - 11340673
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctat 229  Q
    ||||| || ||||| | ||||||||||||||||| | | |||| ||||||||  ||||||| |||||| |||||||||    
T  11340750 ataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataagctat 11340673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 24838851 - 24838790
Alignment:
Q  169 caaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatc 230  Q
    |||||||||||| ||||   |||||| ||||||||| |||||||||| ||| ||||||||||    
T  24838851 caaaagataaaacaaagactaattattttcatataagctataagctgatttcataagctatc 24838790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 29274354 - 29274281
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataag 225  Q
    ||||| |||||||| |||||||||||||||||||   |||| | ||||||||| |||||| ||| ||| |||||    
T  29274354 ataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataag 29274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 1575934 - 1575981
Alignment:
Q  246 aaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||||||||||||||||||||  ||| ||||| ||||||||||||||||    
T  1575934 aaataagttaaaaacagcttatgaac-atgtcataagttgttttcataa 1575981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 2112164 - 2112235
Alignment:
Q  170 aaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtactta 242  Q
    |||||||||||||||| | |||| | ||||||||| ||||||| || ||| |||| |||||||||||| ||||    
T  2112164 aaaagataaaataaagttaaattgt-ttcatataaactataagttgttttcataaactatcttagagtgctta 2112235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 7946061 - 7946025
Alignment:
Q  99 tttggataaacaactta-tttgtagcttatagcataa 134  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7946061 tttggataaacaacttattttgtagcttatagcataa 7946025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 31624089 - 31624176
Alignment:
Q  206 ctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||||||||| ||| ||| |||||||| ||| | ||| | ||||||||| |||||||||||  ||| ||||| |||| |||||||||||    
T  31624089 ctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaac-atgtcataagctgttttcataa 31624176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 12425534 - 12425678
Alignment:
Q  170 aaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaa 269  Q
    |||||||||||||||| | |||| | ||| ||||| |||||||||| ||| | |||||||||| ||| ||||| | ||||||||| |||||| ||||       
T  12425534 aaaagataaaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaacaacttattg 12425633  T
Q  270 acaatgtcttaagttgttttcataattaagttcttccaaacagtctc 316  Q
    ||||||| ||| ||||||||||||  |||||||| ||||||||||||    
T  12425634 acaatgttttaggttgttttcata--taagttctcccaaacagtctc 12425678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 135 - 294
Target Start/End: Original strand, 39105392 - 39105551
Alignment:
Q  135 atgataagctcttacacataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttag 234  Q
    ||||||||| ||||   ||||| |||||||| ||| ||| || |||| ||| | |||| | ||| ||||| |||||| ||| ||| |||||||||||| |    
T  39105392 atgataagcgcttatgtataagctatttctatagctaaatatgaaatgaagttaaattgttttcgtataagctataatctgttttcataagctatcttgg 39105491  T
Q  235 agtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    || ||||| | ||||||| |||||| ||||||  ||||||||| |||| |||||||||||    
T  39105492 agaacttatgaaaataagctaaaaatagcttatgaacaatgtcataagctgttttcataa 39105551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 288
Target Start/End: Complemental strand, 9202935 - 9202737
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagcataa---------atgataagctcttacacataagttatttctagagcaaaagataaaataaaggtga 189  Q
    |||||||||||| |||||||| ||||||||||| ||         ||||||||  |||| | ||||| |||||||  ||||||||||||||||||| | |    
T  9202935 tttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataagtgcttatatataagctatttctgtagcaaaagataaaataaagttaa 9202836  T
Q  190 attatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttt 288  Q
    ||| | ||||||||| | |||||||| ||| ||||| ||||||  || ||||| | ||||||| |  ||||||||||  ||||||||| |||| |||||    
T  9202835 attgttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctggaaacagcttatgaacaatgtcataagctgttt 9202737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 266
Target Start/End: Complemental strand, 12595857 - 12595751
Alignment:
Q  160 tttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaa 259  Q
    |||||| | ||||||||||||||||| | |||| | ||||||||| |||| ||||||||| |||||||| |||| ||  ||||   |||| |||| ||||    
T  12595857 tttctataacaaaagataaaataaagttaaattgttttcatataaactatgagctggtttcataagctaccttaaagagcttatagaaatcagttgaaaa 12595758  T
Q  260 cagctta 266  Q
    |||||||    
T  12595757 cagctta 12595751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 316
Target Start/End: Original strand, 7674576 - 7674752
Alignment:
Q  135 atgataagctcttacacataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttag 234  Q
    ||||||||| |||| | ||||| |||||||| | ||||||||||||||||  | |||| | ||| ||||| | ||||  || ||| |||||||||||| |    
T  7674576 atgataagcacttatatataagctatttctataccaaaagataaaataaatttaaattgttttcttataagccataaaatgttttcataagctatcttgg 7674675  T
Q  235 agtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataattaagttcttccaaacagtctc 316  Q
    || | ||  | ||||||| | |||||| |||| |||| ||||| |||||||||| ||    ||||||||||||| |||||||    
T  7674676 agaatttgtgaaaataagctgaaaacaccttataaac-atgtcataagttgtttcca----taagttcttccaagcagtctc 7674752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 35550911 - 35550971
Alignment:
Q  169 caaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatc 230  Q
    |||||||||||||||| || |||||| ||||||||| |||||||||| ||| |||| |||||    
T  35550911 caaaagataaaataaa-gtcaattattttcatataaactataagctgtttttataacctatc 35550971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 32372497 - 32372529
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||| |||||||||||    
T  32372497 tttggataaacaacttatttgcagcttatagca 32372529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 36542362 - 36542294
Alignment:
Q  197 tcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagctt 265  Q
    |||||||| |||||||||| ||  |||||||||| |||||  |||  | ||||||||||||||||||||    
T  36542362 tcatataagctataagctgattccataagctatcctagagagcttgtggaaataagttaaaaacagctt 36542294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 40119975 - 40119851
Alignment:
Q  170 aaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaa 269  Q
    ||||||||||| |||| |||||||| | | ||||| |||||| ||| ||| |||||| ||||| ||  ||||  | ||||||  ||| ||||||||   |    
T  40119975 aaaagataaaacaaagttgaattatttccgtataagctataacctgttttcataagcgatcttggataacttgtgaaaataatctaagaacagcttgtga 40119876  T
Q  270 acaatgtcttaagttgttttcataa 294  Q
    |||||||| | ||||||||||||||    
T  40119875 acaatgtcattagttgttttcataa 40119851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 18066079 - 18066215
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaa 257  Q
    |||||||| || |||| || |||||||| | |||| | ||||||||| |||||||||| ||| |||||||||||| ||| ||||||| ||||||| | ||    
T  18066079 tatttctacagtaaaatatgaaataaagttaaattgttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaa 18066178  T
Q  258 aacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    || ||||||  | ||||||| |||| |||||||||||    
T  18066179 aatagcttatgagcaatgtcataagctgttttcataa 18066215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 22681312 - 22681196
Alignment:
Q  150 acataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaat 249  Q
    |||||| |||||| || | |||||||||||| ||||   |||| | ||||||||| |||||||||| ||| |||| ||||| ||||| ||||| | ||||    
T  22681312 acataaattatttttaaaacaaaagataaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaat 22681213  T
Q  250 aagttaaaaacagctta 266  Q
    ||| |||||||||||||    
T  22681212 aagctaaaaacagctta 22681196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 289
Target Start/End: Original strand, 3611171 - 3611308
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    |||||||||||||| |||||||| |||||||||| | |||| | ||  |||| | ||||  ||| ||| | |||||||||| ||| ||||| | ||||||    
T  3611171 ataagttatttctatagcaaaaggtaaaataaagttaaattgtttttgtatagtttatagactgttttcacaagctatcttggagaacttatgaaaataa 3611270  T
Q  252 gttaaaaacagcttacaaacaatgtcttaagttgtttt 289  Q
    | ||||||||| |||  || |||||| |||||||||||    
T  3611271 gctaaaaacagtttatgaataatgtcataagttgtttt 3611308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 27695797 - 27695752
Alignment:
Q  86 tactatggcactatttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  27695797 tactatggacctatttggataaacaacttatttgtagcttatagca 27695752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 43199359 - 43199437
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatc 230  Q
    |||||||||||||| | ||||||||||||||||| | |||||| ||| ||||| ||||||| || ||| |||| |||||    
T  43199359 ataagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataaactatc 43199437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 26143766 - 26143665
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcat-ataatctataagctggtttgataagctatcttagagtacttaagcaaata 250  Q
    ||||| |||||||| ||||||||||||||||||| | |||||||||| | | || || ||||||| ||| |||||||| ||| ||| ||||| | |||||    
T  26143766 ataagctatttctatagcaaaagataaaataaagttcaattatattcgtaaaaaactgtaagctgttttcataagctaacttggagaacttatgaaaata 26143667  T
Q  251 ag 252  Q
    ||    
T  26143666 ag 26143665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 26626758 - 26626794
Alignment:
Q  98 atttggataaacaacttatttgtagcttatagcataa 134  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26626758 atttggataaacaacttatttgcagcttatagcataa 26626794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 40279084 - 40279116
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||||||||||||||||||||||||    
T  40279084 tttggataaacaacttatttgtagcttatagca 40279116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 3932293 - 3932328
Alignment:
Q  150 acataagttatttctagagcaaaagataaaataaag 185  Q
    |||||||||||||||| |||||||||||||||||||    
T  3932293 acataagttatttctatagcaaaagataaaataaag 3932328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 9174814 - 9174897
Alignment:
Q  206 ctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgtttt 289  Q
    |||||||||| ||| ||||||||||||| ||  |||| | ||||||| | |||| ||||||  ||||||||| |||||||||||    
T  9174814 ctataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatgaacaatgtcataagttgtttt 9174897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 9395083 - 9395138
Alignment:
Q  160 tttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctg 215  Q
    |||||| || |||||||||||||||| | |||| | ||||||||||||||||||||    
T  9395083 tttctatagaaaaagataaaataaagctaaattgttttcatataatctataagctg 9395138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 750679 - 750757
Alignment:
Q  216 gtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||| |||||||||||| ||| ||||| ||||||||| | |||||||||||  ||||||||| | || | |||||||||    
T  750679 gtttcataagctatcttggagaacttatgcaaataagctcaaaacagcttatgaacaatgtcattagctcttttcataa 750757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 2416258 - 2416348
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtactta 242  Q
    |||||||||||||  ||||||||||||||| ||| | |||| | || |||||| |||||||||| ||| ||||| ||| | |||| |||||    
T  2416258 ataagttatttctgtagcaaaagataaaatgaagttaaattgttttgatataagctataagctgtttttataagttatataagagaactta 2416348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 4606939 - 4607009
Alignment:
Q  221 ataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttca 291  Q
    |||||||||||| ||| ||||| | ||||||| ||||| ||||| |  ||||||||| |||||||||||||    
T  4606939 ataagctatcttggagaacttatgaaaataagctaaaagcagctcatgaacaatgtcataagttgttttca 4607009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 29288618 - 29288664
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataa 204  Q
    |||||||| | |||||||||||||||||||||||| | |||||||||    
T  29288618 tatttctacaacaaaagataaaataaaggtgaattgttttcatataa 29288664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 16451011 - 16451056
Alignment:
Q  89 tatggcactatttggataaacaacttatttgtagcttatagcataa 134  Q
    |||||| ||||||||||||||| |||||||| |||||| |||||||    
T  16451011 tatggccctatttggataaacatcttatttgcagcttacagcataa 16451056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 32592463 - 32592492
Alignment:
Q  102 ggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||||||||||||    
T  32592463 ggataaacaacttatttgtagcttatagca 32592492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 41460740 - 41460773
Alignment:
Q  98 atttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||| ||||||||||||    
T  41460740 atttggataaacaacttatttatagcttatagca 41460773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 14220995 - 14220963
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||| ||||||||||||||||||||    
T  14220995 tttggataaacagcttatttgtagcttatagca 14220963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 29288829 - 29288873
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatat 202  Q
    |||||||| | |||||||||||||||||||||||| | |||||||    
T  29288829 tatttctacaacaaaagataaaataaaggtgaattgttttcatat 29288873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 29300608 - 29300668
Alignment:
Q  170 aaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatc 230  Q
    ||||||||||||||||||||||| | ||||| |||  |||||| || ||| ||||||||||    
T  29300608 aaaagataaaataaaggtgaattgttttcatgtaagttataagttgttttcataagctatc 29300668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 29316880 - 29316800
Alignment:
Q  172 aagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataag 252  Q
    |||||||||||| | | |||| | |||| ||||||||||||||| ||| || ||||||||| ||| ||||| | |||||||    
T  29316880 aagataaaataaggttaaattgttttcacataatctataagctgttttcatcagctatcttggagaacttatggaaataag 29316800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 36043951 - 36043991
Alignment:
Q  254 taaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||||||||||||  ||||||||| ||||||||||||||||    
T  36043951 taaaaacagcttatgaacaatgtcgtaagttgttttcataa 36043991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 40158646 - 40158682
Alignment:
Q  99 tttggataaacaactta-tttgtagcttatagcataa 134  Q
    ||||||||||||||||| |||||||||||||||||||    
T  40158646 tttggataaacaacttaatttgtagcttatagcataa 40158682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 40835437 - 40835469
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||| |||||||||||    
T  40835437 tttggataaacaacttatttgcagcttatagca 40835469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 312
Target Start/End: Complemental strand, 3887757 - 3887601
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    ||||| |||||| | ||||||||||||||||||| | |||||  ||| ||  | |||||||||| ||| | |||||| ||  ||| ||||| | ||||||    
T  3887757 ataagctatttcaatagcaaaagataaaataaagttaaattaatttcttacgagctataagctgattttacaagctagctaggagaacttatgaaaataa 3887658  T
Q  252 gttaaaaacagcttacaaacaatgtcttaagttgttttcataattaagttcttccaaacag 312  Q
    |||||||||||||||  ||||||||| |||| ||||||||    |||||||||||||||||    
T  3887657 gttaaaaacagcttatgaacaatgtcataagatgttttca----taagttcttccaaacag 3887601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 24915170 - 24915034
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaa 257  Q
    |||||||| |||| |||||||||||||| | |||| | ||  ||||  |||||||||| ||| ||||||| |||| ||| ||||  | ||||||||| ||    
T  24915170 tatttctatagcagaagataaaataaagttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaa 24915071  T
Q  258 aacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    || ||||||  || |||||| ||||||||||||||||    
T  24915070 aaaagcttatgaaaaatgtcataagttgttttcataa 24915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 9656600 - 9656673
Alignment:
Q  157 ttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatc 230  Q
    ||||||||| ||||||| ||||||||||| | |||||| ||||||||| ||||||||||  || ||||||||||    
T  9656600 ttatttctatagcaaaaaataaaataaagttaaattattttcatataagctataagctgtgttcataagctatc 9656673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 51695615 - 51695460
Alignment:
Q  156 gttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagtta 255  Q
    |||||||||| || ||||||||||||||| || |||| | ||| |||||  ||| || || ||| |||||||||||| ||| | ||| | ||||||| |     
T  51695615 gttatttctatagtaaaagataaaataaa-gtaaattgttttcgtataagttatcagatgttttcataagctatcttggagaatttatgaaaataagctg 51695517  T
Q  256 aaaacagcttacaaacaatgtcttaagttgttttcataattaagttcttccaaacagtctc 316  Q
    |||| ||||||  ||||||||  ||||||||||  |||  |||||||||||||||||||||    
T  51695516 aaaatagcttatgaacaatgtgataagttgttt--ata--taagttcttccaaacagtctc 51695460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 49517015 - 49517096
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatctta 233  Q
    |||||||||||||| | |||||||||||||||||   |||| | ||||| ||| |||||||||| ||| |||||||| ||||    
T  49517015 ataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataagctagctta 49517096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 11211063 - 11211115
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataa 204  Q
    |||||||||||||||| ||||||||||||||||| | |||| | |||||||||    
T  11211063 ataagttatttctagaacaaaagataaaataaagttaaatttttttcatataa 11211115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 51190730 - 51190762
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||||||||||||||||||||||||    
T  51190730 tttggataaacaacttatttgtagcttatagca 51190762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 27820527 - 27820492
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagcataa 134  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27820527 tttggataaacaacttatttgcagcttatagcataa 27820492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 47499037 - 47498998
Alignment:
Q  92 ggcactatttggataaacaacttatttgtagcttatagca 131  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  47499037 ggcactgtttggataaacaacttatttgcagcttatagca 47498998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 27970462 - 27970428
Alignment:
Q  97 tatttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||||| |||||||||||    
T  27970462 tatttggataaacaacttatttgcagcttatagca 27970428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 49888730 - 49888812
Alignment:
Q  170 aaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataag 252  Q
    |||||||||||||||| | |||| | ||| ||||| |||| || || ||| |||||||||||||||| ||||| | |||||||    
T  49888730 aaaagataaaataaagtttaattgttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataag 49888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 7069245 - 7069378
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggt-gaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaata 250  Q
    ||||| |||| ||| |||||||||||||| |||  | ||||| | ||| ||||| |||||||||| |||  ||||||||||| ||| ||||| | ||||     
T  7069245 ataagctattactatagcaaaagataaaaaaaaaattgaattgttttcgtataagctataagctgcttttgtaagctatcttggagaacttatgaaaatg 7069344  T
Q  251 agttaaaaacagcttacaaacaatgtcttaagtt 284  Q
    | |||||||||  |||  ||||||||| ||||||    
T  7069345 aattaaaaacaaattatgaacaatgtcataagtt 7069378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 15784329 - 15784406
Alignment:
Q  207 tataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagtt 284  Q
    ||||||||||||| |||||||||||| ||| ||||  | ||||||| |||||||| |||   ||||||||| ||||||    
T  15784329 tataagctggttttataagctatcttggagaacttgtgaaaataagctaaaaacaacttgtgaacaatgtcataagtt 15784406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 261
Target Start/End: Original strand, 17269195 - 17269304
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    |||||||||||||||| ||||||  |||||||||   |||| | ||||||||| | ||||| || ||| |||||||||| | |||  |||| |  |||||    
T  17269195 ataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcctggagagcttacggtaataa 17269294  T
Q  252 gttaaaaaca 261  Q
    ||||||||||    
T  17269295 gttaaaaaca 17269304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 316
Target Start/End: Complemental strand, 31517859 - 31517706
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaa 257  Q
    |||||||| | ||||||||||||||||| | ||||   ||||||||| ||||||||||  || |||| || |||| |||  |||| | ||||||| | ||    
T  31517859 tatttctacaacaaaagataaaataaagttaaattgatttcatataagctataagctgtcttcataatctgtcttggagagcttatgaaaataagctgaa 31517760  T
Q  258 aacagcttacaaacaatgtcttaagttgttttcataattaagttcttccaaacagtctc 316  Q
    |||||||||  ||| ||||| | ||||||||| |    |||||||| ||||||||||||    
T  31517759 aacagcttatgaac-atgtcatgagttgttttga----taagttctcccaaacagtctc 31517706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 277
Target Start/End: Original strand, 34952160 - 34952285
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    ||||| ||||||||||||| ||| |||||||||| | |||| | |||  |||| || |||| || ||| ||||||||||  |||| ||||| | ||||||    
T  34952160 ataagctatttctagagcagaagttaaaataaagttaaattgttttcgaataagctgtaagttgttttcataagctatcaaagagaacttatgaaaataa 34952259  T
Q  252 gttaaaaacagcttacaaacaatgtc 277  Q
    | | ||||| ||||  ||||||||||    
T  34952260 gctgaaaactgcttctaaacaatgtc 34952285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 4777410 - 4777378
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  4777410 ataagttatttctatagcaaaagataaaataaa 4777378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 7137075 - 7137023
Alignment:
Q  200 tataatctataagctggtttgataagctatcttagagtacttaagcaaataag 252  Q
    |||||||||||||||| ||| |||||||||||| ||| ||||| | |||||||    
T  7137075 tataatctataagctgttttcataagctatcttggagaacttatgaaaataag 7137023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 17727292 - 17727260
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||||||||| ||||||||||||||    
T  17727292 tttggataaacaacttatgtgtagcttatagca 17727260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 17834335 - 17834303
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||| |||||||||||||||    
T  17834335 tttggataaacaacttaattgtagcttatagca 17834303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 49557086 - 49557146
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataag 212  Q
    |||||||||||||| | ||||||||||||||||| | |||  ||||||| ||| |||||||    
T  49557086 ataagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataag 49557146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 40689105 - 40688997
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaa 257  Q
    |||||||| ||||||||||||||||||| | |||||| ||||||||| ||||||||||  || |||||||||| | ||  ||||| | ||||||| | ||    
T  40689105 tatttctatagcaaaagataaaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctcaa 40689006  T
Q  258 aacagctta 266  Q
    |||||||||    
T  40689005 aacagctta 40688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 294
Target Start/End: Original strand, 30535494 - 30535649
Alignment:
Q  138 ataagctcttacacataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagt 237  Q
    |||||| |||||  |||||||| ||||| | ||||||||||||| ||  |||| | | ||| |||||||||||||||| ||  ||||||||||||| ||     
T  30535494 ataagcacttacgtataagttacttctataacaaaagataaaattaaattgaagtgttttcgtataatctataagctgtttccataagctatcttataga 30535593  T
Q  238 acttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    || || | ||||||  | |||||||||||| ||| || || ||||||||||||||||    
T  30535594 acatatgaaaataacctgaaaacagcttacgaac-atatcataagttgttttcataa 30535649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 38010657 - 38010773
Alignment:
Q  150 acataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaat 249  Q
    |||||| |||||| || | |||||||||||| ||||   |||| | ||||||||| |||||||||| ||| |||| ||||| ||||| ||||| | ||||    
T  38010657 acataaattatttttaaaacaaaagataaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaat 38010756  T
Q  250 aagttaaaaacagctta 266  Q
    ||| |||||||||||||    
T  38010757 aagctaaaaacagctta 38010773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 20526406 - 20526533
Alignment:
Q  167 agcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagctta 266  Q
    ||||||||||||||||||| | |||||| ||  || |  |||||||||| ||| ||||||||| || ||| ||| | | ||||||| |||||||||||||    
T  20526406 agcaaaagataaaataaagttaaattatgtttgtacatgctataagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagctta 20526505  T
Q  267 caaacaatgtcttaagttgttttcataa 294  Q
    | || |||||  |||  |||||||||||    
T  20526506 cgaaaaatgtgataaactgttttcataa 20526533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 39967880 - 39968007
Alignment:
Q  167 agcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagctta 266  Q
    ||||||||||||||||||  | |||| | ||| ||  | ||||||| || ||| ||||||||||| |||| ||| | | ||||||||| |||||||||||    
T  39967880 agcaaaagataaaataaacttaaattgttttcgtactagctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagctta 39967979  T
Q  267 caaacaatgtcttaagttgttttcataa 294  Q
      ||||||| | |||| |||||||||||    
T  39967980 tgaacaatgccataagctgttttcataa 39968007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 34035931 - 34036004
Alignment:
Q  221 ataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||||||||||||||| ||||  | ||||||||| |||||| ||||  ||||||||| |||||| |||||||||    
T  34035931 ataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataa 34036004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 27863894 - 27863862
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||||||||||||||||||||||||    
T  27863894 tttggataaacaacttatttgtagcttatagca 27863862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 31002723 - 31002781
Alignment:
Q  169 caaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagct 227  Q
    |||||||||||||||||   || ||| ||||||||| |||||||||| |||||||||||    
T  31002723 caaaagataaaataaagtcaaaatattttcatataagctataagctgttttgataagct 31002781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 20258396 - 20258425
Alignment:
Q  99 tttggataaacaacttatttgtagcttata 128  Q
    ||||||||||||||||||||||||||||||    
T  20258396 tttggataaacaacttatttgtagcttata 20258425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 20269460 - 20269489
Alignment:
Q  99 tttggataaacaacttatttgtagcttata 128  Q
    ||||||||||||||||||||||||||||||    
T  20269460 tttggataaacaacttatttgtagcttata 20269489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 22759148 - 22759209
Alignment:
Q  169 caaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatc 230  Q
    ||||||||||||||||||  |||| | ||||||||| ||| |||||| ||| ||||||||||    
T  22759148 caaaagataaaataaaggaaaattgttttcatataagctaaaagctgatttcataagctatc 22759209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 27548223 - 27548288
Alignment:
Q  167 agcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatctt 232  Q
    |||||||||||||||||||   |||| | ||||| ||| |||||||||| ||| ||||||||||||    
T  27548223 agcaaaagataaaataaagtctaattgttttcatttaagctataagctgttttcataagctatctt 27548288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 3968320 - 3968288
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaa 184  Q
    |||||||||||||| ||||||||||||||||||    
T  3968320 ataagttatttctatagcaaaagataaaataaa 3968288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 12110353 - 12110468
Alignment:
Q  200 tataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataattaag 299  Q
    ||||| |||||||||| ||| ||||||||||||  || ||||| | ||||||  ||||||||| ||   ||| ||||| ||||||||||||||||  ||     
T  12110353 tataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaacagtttgtgaac-atgtcataagttgttttcataagcaat 12110451  T
Q  300 ttcttccaaacagtctc 316  Q
     ||| ||||||||||||    
T  12110452 atctcccaaacagtctc 12110468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 15740442 - 15740395
Alignment:
Q  246 aaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||||||||||||||||||||  ||| ||||| ||||||||||||||||    
T  15740442 aaataagttaaaaacagcttatgaac-atgtcataagttgttttcataa 15740395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 18865247 - 18865215
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||| |||||||||||    
T  18865247 tttggataaacaacttatttgcagcttatagca 18865215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 28900757 - 28900789
Alignment:
Q  96 ctatttggataaacaacttatttgtagcttata 128  Q
    |||||||||||||||||||||||| ||||||||    
T  28900757 ctatttggataaacaacttatttgcagcttata 28900789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 32156888 - 32156928
Alignment:
Q  96 ctatttggataaacaactt-atttgtagcttatagcataaa 135  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  32156888 ctatttggataaacaacttaatttgcagcttatagcataaa 32156928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 33678779 - 33678867
Alignment:
Q  206 ctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||||||||| ||| |||||||||||| ||  ||||  | ||||||||| |||||| || |  ||||||||  ||||||||||||||||    
T  33678779 ctataagctgttttcataagctatcttggaaaacttgtgaaaataagttgaaaacatctcatgaacaatgttataagttgttttcataa 33678867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 21367637 - 21367754
Alignment:
Q  177 aaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgt 276  Q
    ||||||||| | |||| | ||| |||||| |||||| || ||| |||||||||||| ||| ||||| | ||||||| | ||||||||||   ||||||||    
T  21367637 aaaataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgt 21367736  T
Q  277 cttaagttgttttcataa 294  Q
    | |||| |||||||||||    
T  21367737 cataagctgttttcataa 21367754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 33405286 - 33405212
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatctt 232  Q
    |||||||| |||||||| |||||||||| | | || | ||||||||| |||||||||| ||| ||||||||||||    
T  33405286 tatttctatagcaaaaggtaaaataaagttaatttgttttcatataagctataagctgttttcataagctatctt 33405212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 46886884 - 46886849
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagcataa 134  Q
    ||||||||||||||||||||| ||||||||||||||    
T  46886884 tttggataaacaacttatttgcagcttatagcataa 46886849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 50946446 - 50946399
Alignment:
Q  92 ggcactatttggataaacaacttatttgtagcttatagcataaatgat 139  Q
    |||| |||||||||| |||||||||||| ||||||||||| |||||||    
T  50946446 ggcattatttggatatacaacttatttgcagcttatagcagaaatgat 50946399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 34235263 - 34235233
Alignment:
Q  99 tttggataaacaacttatttgtagcttatag 129  Q
    |||||||||||||||||||||||||||||||    
T  34235263 tttggataaacaacttatttgtagcttatag 34235233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 39602335 - 39602226
Alignment:
Q  151 cataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaata 250  Q
    |||||| |||||||| || ||||||||| |||||| | |||| | | | |||||  ||||||||| ||| |||||||||||| ||| ||||| | |||||    
T  39602335 cataagctatttctatagaaaaagataacataaagttaaattgt-tgcgtataagttataagctgttttcataagctatctttgagaacttatgaaaata 39602237  T
Q  251 agttaaaaaca 261  Q
    |||| ||||||    
T  39602236 agttgaaaaca 39602226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 37389197 - 37389270
Alignment:
Q  221 ataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||||||||||| ||||||||| |  |||||| ||||| |||| |   ||||||||| ||||||||||||||||    
T  37389197 ataagctatcttggagtacttatgagaataagctaaaagcagcatttgaacaatgtcataagttgttttcataa 37389270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 37788806 - 37788882
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctat 229  Q
    ||||||||||| || | |||||||||||||||||   |||||| ||| ||||||||||||| || ||| |||||||||    
T  37788806 ataagttattt-tataacaaaagataaaataaagtccaattattttcgtataatctataagttgttttcataagctat 37788882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 849555 - 849587
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||| |||||||||||    
T  849555 tttggataaacaacttatttgcagcttatagca 849587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 2175876 - 2175833
Alignment:
Q  250 aagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||    
T  2175876 aagttgaaaacagcttacaaac-atgtcataagttgttttcataa 2175833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 3846078 - 3846046
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||| ||||||||||||||||||||    
T  3846078 tttggataaacagcttatttgtagcttatagca 3846046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 10101601 - 10101549
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataa 204  Q
    |||||||||||||| | ||||||||||||||||| | |||| | |||||||||    
T  10101601 ataagttatttctataacaaaagataaaataaagttaaattgttttcatataa 10101549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 10212526 - 10212474
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataa 204  Q
    |||||||||||||| | ||||||||||||||||| | |||| | |||||||||    
T  10212526 ataagttatttctataacaaaagataaaataaagttaaattgttttcatataa 10212474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 10357378 - 10357462
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagag 236  Q
    |||||||||||||| | ||||||||||||||| | | |||| | |||||||||  || ||| || ||| |||||| |||||||||    
T  10357378 ataagttatttctataacaaaagataaaataatgttaaatttttttcatataagatacaagttgttttcataagccatcttagag 10357462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 20003481 - 20003449
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||| ||||||||||||||||||||||||||    
T  20003481 tttggagaaacaacttatttgtagcttatagca 20003449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 23785199 - 23785259
Alignment:
Q  151 cataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataa 211  Q
    ||||||||||||||| |||| ||||||||||||||   || | ||||||||||| ||||||    
T  23785199 cataagttatttctacagcagaagataaaataaagtcaaactgtattcatataagctataa 23785259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 30365728 - 30365696
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||||||||||| ||||||||||||    
T  30365728 tttggataaacaacttatttatagcttatagca 30365696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 30956753 - 30956661
Alignment:
Q  150 acataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtactta 242  Q
    ||||||| |||||||| ||||||||||||||||||| | |||| | ||  ||||  ||||||| || ||| | |||||||||| ||| |||||    
T  30956753 acataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaactta 30956661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 30972565 - 30972473
Alignment:
Q  150 acataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtactta 242  Q
    ||||||| |||||||| ||||||||||||||||||| | |||| | ||  ||||  ||||||| || ||| | |||||||||| ||| |||||    
T  30972565 acataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaactta 30972473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 36783453 - 36783345
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaa 257  Q
    |||||||| | |||||||||||||||||   |||| | ||||||||| |||| ||||| ||| ||||||||| || ||| | ||| | | ||||| | ||    
T  36783453 tatttctataccaaaagataaaataaagtaaaattgttttcatataaactattagctgttttcataagctatattggagcaattatgaatataagctgaa 36783354  T
Q  258 aacagctta 266  Q
    |||||||||    
T  36783353 aacagctta 36783345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 37689175 - 37689211
Alignment:
Q  149 cacataagttatttctagagcaaaagataaaataaag 185  Q
    |||||||| |||||||| |||||||||||||||||||    
T  37689175 cacataagctatttctatagcaaaagataaaataaag 37689211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 49803156 - 49803295
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    |||||||||||||| ||||||||||||||| ||| | |||| | |||| ||||  | ||   || ||||||||||| |||| ||| |||||||  |||||    
T  49803156 ataagttatttctatagcaaaagataaaatgaagttaaattgttttcacataagttgta---tgttttgataagctttcttggagaacttaagacaataa 49803252  T
Q  252 gttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    | | ||||||||| |  ||||||||| ||||||| ||||||||    
T  49803253 gctgaaaacagctaatgaacaatgtcataagttgctttcataa 49803295  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 46859863 - 46859953
Alignment:
Q  139 taagctcttacacataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatc 230  Q
    ||||| ||||| ||||||||||||||| | |||||||||||||||||   ||| || |||||| ||||||||||||| ||| |||| |||||    
T  46859863 taagcacttacgcataagttatttctaca-caaaagataaaataaagtcaaatcattttcatacaatctataagctgtttttataacctatc 46859953  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 3155548 - 3155690
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataa 251  Q
    ||||| |||||||| ||||||||||||||||||| | |||| | ||  || || ||| |||||| ||| |||| |||||||  || ||| | | ||||||    
T  3155548 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaataa 3155647  T
Q  252 gttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    | | ||||||| |||| ||||||| | ||||||||| ||||||    
T  3155648 gctgaaaacagtttacgaacaatgccataagttgttctcataa 3155690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 49219084 - 49219165
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatctta 233  Q
    |||||||||||||| | ||||| |||||||||||   |||||| ||||||||| ||||||| || ||| |||| ||||||||    
T  49219084 ataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaactatctta 49219165  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 27330222 - 27330190
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||||||||||||||||||||||||    
T  27330222 tttggataaacaacttatttgtagcttatagca 27330190  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 4071833 - 4071904
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctat 229  Q
    |||||||| | |||||||||||||||||   |||||| ||||||||| ||||||| || | |||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgttatgataagctat 4071904  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 17822936 - 17822849
Alignment:
Q  206 ctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagcttacaaacaatgtcttaagttgttttcata 293  Q
    ||||||| || ||| |||||||||||| ||| ||||| | ||||||| |||||| ||||||  || |||||| |||| ||||||||||    
T  17822936 ctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcata 17822849  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 44319912 - 44320006
Alignment:
Q  170 aaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagct 264  Q
    ||||||||||||||||  ||| | | ||||||||| ||| |||||  |||||||||||||| ||||| ||||| | |||| |||| |||| ||||    
T  44319912 aaaagataaaataaagtcgaactgttttcatataagctacaagctattttgataagctatcctagagaacttatgaaaattagttgaaaatagct 44320006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 51630062 - 51630136
Alignment:
Q  158 tatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatctt 232  Q
    ||||| || ||||||||||||||||||| | |||| | || |||||| |||||||||  ||| ||||||||||||    
T  51630062 tatttatatagcaaaagataaaataaagttaaattgttttgatataagctataagctattttcataagctatctt 51630136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 9509756 - 9509711
Alignment:
Q  159 atttctagagcaaaagataaaataaaggtgaattatattcatataa 204  Q
    ||||||| | |||||||||||||||||||||||| | |||||||||    
T  9509756 atttctacaacaaaagataaaataaaggtgaattgttttcatataa 9509711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 20719752 - 20719806
Alignment:
Q  256 aaaacagcttacaaacaatgtcttaagttgttttcataattaagttcttccaaacagtc 314  Q
    |||||||||||||||||||||| |||| |||||||    ||||||||||||||| ||||    
T  20719752 aaaacagcttacaaacaatgtcataagctgttttc----ttaagttcttccaaatagtc 20719806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 44248738 - 44248775
Alignment:
Q  96 ctatttggataaacaacttatttgtagcttatagcata 133  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  44248738 ctatttggataaacaactaatttgcagcttatagcata 44248775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 1965980 - 1966027
Alignment:
Q  246 aaataagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 294  Q
    |||||||||||||||||||||  ||| ||||| ||||||||||||||||    
T  1965980 aaataagttaaaaacagcttatgaac-atgtcataagttgttttcataa 1966027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 30024644 - 30024704
Alignment:
Q  151 cataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataa 211  Q
    ||||||||||||||| | |||||||||||||||||   |||| | ||||||||| ||||||    
T  30024644 cataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctataa 30024704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 35571708 - 35571644
Alignment:
Q  200 tataatctataagctggtttgataagctatcttagagtacttaagcaaataagttaaaaacagct 264  Q
    ||||| |||||||||| ||| |||||||||||||||| ||||  | ||||||||| ||| |||||    
T  35571708 tataagctataagctgttttcataagctatcttagagaacttgtgaaaataagttgaaaccagct 35571644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 44863149 - 44863117
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    ||||||||||||||||||||| |||||||||||    
T  44863149 tttggataaacaacttatttgcagcttatagca 44863117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 50681286 - 50681254
Alignment:
Q  99 tttggataaacaacttatttgtagcttatagca 131  Q
    |||||||||||||||||||| ||||||||||||    
T  50681286 tttggataaacaacttatttatagcttatagca 50681254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 1849 - 1772
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctat 229  Q
    ||||| || ||||| | ||||||||||||||||| | | |||| ||||||||  ||||||| |||||| |||||||||    
T  1849 ataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataagctat 1772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 3939 - 3862
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctat 229  Q
    ||||| || ||||| | ||||||||||||||||| | | |||| ||||||||  ||||||| |||||| |||||||||    
T  3939 ataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataagctat 3862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 27521 - 27601
Alignment:
Q  152 ataagttatttctagagcaaaagataaaataaaggtgaattatattcatataatctataagctggtttgataagctatctt 232  Q
    |||||||||||||| | || ||||||||||||||   |||| | ||||||||| ||||||| || ||| |||| |||||||    
T  27521 ataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaactatctt 27601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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