View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9312_low_3 (Length: 386)
Name: NF9312_low_3
Description: NF9312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9312_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 23155407 - 23155045
Alignment:
| Q |
16 |
gaaatgaggtaaaggtgtaacagaatattgccaaaacgacgaaaaatgtcataatattgttagaatgatgctatgcagaatatgacttgagacaaaagca |
115 |
Q |
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| T |
23155407 |
gaaatgaggtaaaggtgtaacagaatattgccaaaacgacgaaaaatgtcataatattgttagaatgatgctatgcagaatatgacttgagacaaaagca |
23155308 |
T |
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| Q |
116 |
cattcaagtaacgacgtccaatttccnnnnnnnnnnnnnnnnn-ttggtggatgttaatcgcaaaattcaatggttgatacgtaaatctctttaaaactt |
214 |
Q |
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| T |
23155307 |
cattcaagtaacgacgtccaatttccaaaaaaaaaaataaaaaattggtggatgttaatcgcaaaattcaatggttgatacgtaaatctctttaaaactt |
23155208 |
T |
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| Q |
215 |
taaata----agacatgaaacgcaagcatgttttaccggaaatattaaataataatgtgtattgtttaaaaataatccaatatgaccaaaacaaagaacc |
310 |
Q |
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| T |
23155207 |
taaatatataagacatgaaacgcaagcatgttttaccggaaatattaaataataatgtgtattgtttaaaaataatccaatatgaccaaaacaaagaacc |
23155108 |
T |
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| Q |
311 |
ttgagaaagtttcgtaagnnnnnnnggaaccttgaggnnnnnnntaatcaataaagttaagta |
373 |
Q |
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| T |
23155107 |
ttgagaaagtttcgtaagaaaaaaaggaaccttgaggaaaaaaataatcaataaagttaagta |
23155045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 23142953 - 23142855
Alignment:
| Q |
166 |
atgttaatcgcaaaattcaatggttgatacgtaaatctctttaaaactttaaataagacatgaaacgcaagcatgttttaccggaaatattaaataataa |
265 |
Q |
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| T |
23142953 |
atgttaaacacaaatttcaatagttgttacgtaaat----ttaagactttaaataagacataaaacgcaagcatgttttactggaaatattaaataatca |
23142858 |
T |
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