View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9312_low_4 (Length: 385)
Name: NF9312_low_4
Description: NF9312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9312_low_4 |
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| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 9241851 - 9241637
Alignment:
| Q |
7 |
gttatatctgtgagaacccatcttattactttaaaagtctaaaattttatcagagcaatttaataaagtgtaaagtaaagaatatcatatattgattcac |
106 |
Q |
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| T |
9241851 |
gttatatctgtgagcacacattttattactttaaaagtctaaaattttatgagagcaatttattaaagtgtaaagtaaagaatatcatatattgattaag |
9241752 |
T |
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| Q |
107 |
aaatcaaattgctgatatcacttgtatatcatagtcaagtacaagtttgttaaaataacaatcgttg-ttttttcactctactctttaaaatccacaagt |
205 |
Q |
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| T |
9241751 |
aaaccaaaatgcatatattacttgtatatcatagtcaagcacaagtttgttaaaataacaatccttgtttttttcactctacttttcaaaattcacaagt |
9241652 |
T |
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| Q |
206 |
cccacccaaacatct |
220 |
Q |
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| T |
9241651 |
cccacccaaacatct |
9241637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 9338376 - 9338549
Alignment:
| Q |
29 |
ttattactttaaaagtctaaaattttatcagagcaatttaataaagtgtaaagtaaagaatatcatatattgattcacaaatcaaattgctgatatcact |
128 |
Q |
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| T |
9338376 |
ttattactttaaaagtttaaaattttatctgaacaatttattaaagtgtaaagtaaagaatatcatattttgattaacaacccaaaatgcatatattgta |
9338475 |
T |
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| Q |
129 |
tgtatatcatagtcaagtacaagtttgttaaaataacaatc--gttgttttttcactctactctttaaaatcca |
200 |
Q |
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| T |
9338476 |
tgtatatcatagtcaatcatgagtttgttaaaataacaatccatattttttttcactttacactttaaaatcca |
9338549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 9370213 - 9370256
Alignment:
| Q |
177 |
tttcactctactctttaaaatccacaagtcccacccaaacatct |
220 |
Q |
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| T |
9370213 |
tttcactttacactttaaaatccacaagtcgcacccaaacatct |
9370256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 2489 - 2636
Alignment:
| Q |
72 |
aagtgtaaagtaaagaatatcatatattgattcacaaatcaaattgctgatatcacttgtatatcatagtcaagtacaagtttgttaaaataacaatcgt |
171 |
Q |
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| T |
2489 |
aagtgtaaactaaagaatatcatctattgattaagaaatcaaat-gcagatattgtatgtatatcataatcaatcacgagtttgataaaataacaatcct |
2587 |
T |
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| Q |
172 |
tgtttt--ttcactctactctttaaaatccacaagtcccacccaaacat |
218 |
Q |
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| T |
2588 |
taatttgtttcactttacactttaaaatccacaagtcacacccaaacat |
2636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 15909618 - 15909470
Alignment:
| Q |
70 |
taaagtgtaaagtaaagaatatcatatattgattcacaaatcaaattgctgatatcacttgtatatcatagtcaagtacaagtttgttaaaataacaatc |
169 |
Q |
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| T |
15909618 |
taaactgtaaactaaagaatatcatctattgattaataaatcaaat-gcagatattgtatgtatatcataatcaatcacgagtttgataaaataacaatc |
15909520 |
T |
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| Q |
170 |
gttgtttt--ttcactctactctttaaaatccacaagtcccacccaaaca |
217 |
Q |
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| T |
15909519 |
cttaatttgtttcactttacactttaaaatccacaagtcacacccaaaca |
15909470 |
T |
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