View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9312_low_6 (Length: 315)
Name: NF9312_low_6
Description: NF9312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9312_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 64 - 288
Target Start/End: Original strand, 34563839 - 34564063
Alignment:
| Q |
64 |
gtgtacgtatgaatcactaaattgaagtgcggttgagtgtatctgatctgaatttagctgaaatcatcatatgttcaattcgtttgccaatgccagcctg |
163 |
Q |
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| T |
34563839 |
gtgtacgtatgaatcactaaattgaagtgcggttgagtgtatctgatctgaatttagctgaaatcatcatatgttcaattcgtttgccaatgccagcctg |
34563938 |
T |
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| Q |
164 |
acgagtaaaacggctgcaaattgcaaacaaagaaggatcaaccaatgataatctcaagttgatgtgtcatatccactttacagcccccaccaaattacga |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34563939 |
acgagtaaaacggctgcaaattgcaaacaaagaaggatcaaccaatgataatctcaagttgatgtgtcatatccactttacagcccccaccaaattacga |
34564038 |
T |
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| Q |
264 |
tagcctagtagtgagtcagtaataa |
288 |
Q |
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||||||||||||||||||||||||| |
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| T |
34564039 |
tagcctagtagtgagtcagtaataa |
34564063 |
T |
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