View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9312_low_9 (Length: 235)
Name: NF9312_low_9
Description: NF9312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9312_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2509921 - 2510023
Alignment:
| Q |
1 |
catttatatcaaactttttagaaaagtttgatgtttgtttgtaaactttttcgttgtatccaacgattgcatttaatactataaaattgatctacacgta |
100 |
Q |
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| T |
2509921 |
catttatatcaaactttttagaaaagtttgatgtttgtttgtaaactttttcgttgtatccaacgattgcatttaatactataaaattgatctacacgta |
2510020 |
T |
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| Q |
101 |
aat |
103 |
Q |
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||| |
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| T |
2510021 |
aat |
2510023 |
T |
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Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 2510306 - 2510454
Alignment:
| Q |
104 |
tataaaaaacccatattaattaaaatcattcaatattgttgacaattgaaaaagaaatttgacaa-----------------caattgtccaaaaaatgt |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2510306 |
tataaaaaacccatattaattaaaatcattcaatattgttgacaattgaaaaagaaatttgacaaaatcttgaactctacaacaattgtccaaaaaatgt |
2510405 |
T |
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| Q |
187 |
caacaaatctttccacttcattaaatgtatgtgagagtgtctcttggat |
235 |
Q |
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| T |
2510406 |
caacaaatctttccacttcattaaatgtatgtgagagtgtctcttggat |
2510454 |
T |
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