View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_high_1 (Length: 660)
Name: NF9313_high_1
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Original strand, 5157645 - 5158176
Alignment:
| Q |
18 |
tcatgaaggctacaatccaacttcatgagctgtatctaatgtccctcgcattttcctatattataaacatatctgagctcacttttccaaactaaaattc |
117 |
Q |
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| T |
5157645 |
tcatgaaggctacaatccaacttcatgagctgtatctaatgtccctcgcattttcctatattataaacatatctgagctcacttttccaaactaaaattc |
5157744 |
T |
|
| Q |
118 |
agacaacaaatggatttgatcactttttcttcatttcattctgtcattttgttttgttataacaatgtttcgtgagctttaaggagcatagcaaggaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5157745 |
agacaacaaatggatttgatcactttttcttcatttcattctgtcattttgttttgttataacaatgtttcgtgagctttaaggagcatagcaaggaagg |
5157844 |
T |
|
| Q |
218 |
aactatacatttaatgtactaataactaaacccatgcatgaaaactaaattacatgnnnnnnnngacttagctaagcttattgttatctggtcataaaat |
317 |
Q |
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| T |
5157845 |
agctatacatttaatgtactaataactaaacccatgcatgaaaactaaattacatgttttttttgacttagctaagcttattgttatctggtcataaaat |
5157944 |
T |
|
| Q |
318 |
atactgaaacttatggaatttcctaatagtagcgatgaaggcgatgcctcaagtgataaagaaatgggnnnnnnnncacaaggaggtacaactagtatct |
417 |
Q |
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| T |
5157945 |
atactgaaccttatggaatttcctaatagtagcgatgaaggcgatgcctcaagtgataaagaaatgggttttttttcacaaggaggtacaactagtatct |
5158044 |
T |
|
| Q |
418 |
ccaacacaagggagttcaacacagtgatagatatctaatcaagtttagtaggactagtagaaaacaaggatcatataagaaagaaggaaatacgacaagt |
517 |
Q |
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| T |
5158045 |
ccaacacaagggagttcaacacagtgatagatatctaatcaagtttagtaggactagtagaaaacaaggatcatataagaaagaaggaaatacgacaagt |
5158144 |
T |
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| Q |
518 |
tgctttgaatacgaaaaaatatggcttggatt |
549 |
Q |
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| T |
5158145 |
tgctttgaatacgaaaaaatatggcttggatt |
5158176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 639
Target Start/End: Original strand, 17617314 - 17617382
Alignment:
| Q |
572 |
cttacgttattttcagtatcttttt-agtcagtttagtagataattgagtcattataaaggagtattag |
639 |
Q |
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||||||||||||||| ||| ||||| ||| ||||||||||| |||| |||||||||| |||||| |||| |
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| T |
17617314 |
cttacgttattttcaatatgttttttagtaagtttagtagacaatttagtcattatagaggagttttag |
17617382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 639
Target Start/End: Complemental strand, 8804389 - 8804342
Alignment:
| Q |
592 |
tttttagtcagtttagtagataattgagtcattataaaggagtattag |
639 |
Q |
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|||||| ||||||||||||| ||||||||||||||| |||||| |||| |
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| T |
8804389 |
tttttaatcagtttagtagacaattgagtcattatataggagttttag |
8804342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 632
Target Start/End: Complemental strand, 17034248 - 17034208
Alignment:
| Q |
592 |
tttttagtcagtttagtagataattgagtcattataaagga |
632 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| |
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| T |
17034248 |
tttttagtcaatttagtagacaattgagtcattatagagga |
17034208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 620
Target Start/End: Original strand, 9803358 - 9803406
Alignment:
| Q |
573 |
ttacgttattttcagtatcttttt-agtcagtttagtagataattgagt |
620 |
Q |
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|||||||||||| ||||| ||||| | |||||||||||||||||||||| |
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| T |
9803358 |
ttacgttatttttagtatgtttttgaatcagtttagtagataattgagt |
9803406 |
T |
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