View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9313_high_2 (Length: 582)

Name: NF9313_high_2
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9313_high_2
NF9313_high_2
[»] chr4 (23 HSPs)
chr4 (1-566)||(55371882-55372433)
chr4 (1-62)||(24444017-24444078)
chr4 (19-61)||(28615331-28615373)
chr4 (1-43)||(30207620-30207662)
chr4 (1-42)||(24160545-24160586)
chr4 (16-60)||(11802528-11802572)
chr4 (9-61)||(29778782-29778834)
chr4 (1-44)||(42866047-42866090)
chr4 (1-44)||(49219118-49219161)
chr4 (6-44)||(9841050-9841088)
chr4 (1-59)||(21157747-21157805)
chr4 (1-43)||(49085968-49086010)
chr4 (1-43)||(55870390-55870432)
chr4 (1-62)||(927455-927516)
chr4 (7-44)||(11842200-11842237)
chr4 (1-58)||(23819068-23819125)
chr4 (9-58)||(28252217-28252266)
chr4 (4-61)||(36722700-36722757)
chr4 (9-61)||(8468935-8468987)
chr4 (13-61)||(10206199-10206247)
chr4 (7-59)||(27970043-27970095)
chr4 (13-61)||(32421096-32421144)
chr4 (9-61)||(47118996-47119048)
[»] chr8 (13 HSPs)
chr8 (1-57)||(10460582-10460638)
chr8 (1-62)||(35869816-35869877)
chr8 (1-56)||(6864495-6864550)
chr8 (1-44)||(29973060-29973103)
chr8 (7-61)||(27754389-27754443)
chr8 (1-59)||(28769372-28769430)
chr8 (15-59)||(31891884-31891928)
chr8 (9-44)||(9834837-9834872)
chr8 (9-59)||(11795079-11795129)
chr8 (7-44)||(24558838-24558875)
chr8 (9-61)||(5227522-5227574)
chr8 (4-36)||(11056723-11056755)
chr8 (9-53)||(31884581-31884625)
[»] chr3 (16 HSPs)
chr3 (1-57)||(47904098-47904154)
chr3 (1-58)||(43875627-43875684)
chr3 (9-59)||(14548754-14548804)
chr3 (3-60)||(20502100-20502157)
chr3 (1-58)||(27792851-27792908)
chr3 (1-42)||(43116478-43116519)
chr3 (9-61)||(33405198-33405250)
chr3 (1-45)||(48807687-48807731)
chr3 (1-44)||(24235731-24235774)
chr3 (7-62)||(37788845-37788899)
chr3 (9-44)||(41057025-41057060)
chr3 (1-34)||(28779335-28779368)
chr3 (1-59)||(33965522-33965582)
chr3 (9-45)||(21865563-21865599)
chr3 (1-57)||(28306137-28306193)
chr3 (11-59)||(39228493-39228541)
[»] chr2 (20 HSPs)
chr2 (198-297)||(8516118-8516217)
chr2 (9-59)||(6227738-6227788)
chr2 (8-61)||(39983328-39983381)
chr2 (1-61)||(5043591-5043651)
chr2 (9-61)||(15377752-15377804)
chr2 (9-44)||(11513885-11513920)
chr2 (1-44)||(17952749-17952792)
chr2 (1-59)||(10143151-10143209)
chr2 (1-59)||(40158697-40158755)
chr2 (7-61)||(43635132-43635186)
chr2 (20-57)||(13056136-13056173)
chr2 (9-58)||(15780064-15780113)
chr2 (3-44)||(37292395-37292436)
chr2 (8-61)||(43985034-43985087)
chr2 (1-61)||(6993755-6993815)
chr2 (8-44)||(7862739-7862775)
chr2 (445-505)||(8515936-8515996)
chr2 (1-61)||(13736324-13736384)
chr2 (1-41)||(33942129-33942169)
chr2 (1-61)||(36863656-36863716)
[»] chr6 (10 HSPs)
chr6 (9-58)||(30533776-30533825)
chr6 (3-58)||(1402977-1403032)
chr6 (1-40)||(2117382-2117421)
chr6 (7-58)||(24838777-24838828)
chr6 (3-58)||(31324437-31324492)
chr6 (1-39)||(10452413-10452451)
chr6 (9-54)||(4246397-4246442)
chr6 (9-42)||(7485118-7485151)
chr6 (15-59)||(1401102-1401146)
chr6 (7-59)||(14282644-14282696)
[»] chr1 (25 HSPs)
chr1 (1-61)||(4078180-4078240)
chr1 (1-48)||(10581121-10581168)
chr1 (1-56)||(47960660-47960715)
chr1 (2-44)||(12564922-12564964)
chr1 (1-59)||(16322828-16322886)
chr1 (1-55)||(48830113-48830167)
chr1 (1-58)||(5150916-5150973)
chr1 (12-61)||(5592716-5592765)
chr1 (9-58)||(25005831-25005880)
chr1 (1-58)||(29007750-29007807)
chr1 (1-58)||(42556665-42556722)
chr1 (1-53)||(45205047-45205099)
chr1 (1-44)||(8130415-8130458)
chr1 (9-44)||(25006082-25006117)
chr1 (1-43)||(28467356-28467398)
chr1 (1-54)||(27887156-27887209)
chr1 (1-61)||(45107601-45107664)
chr1 (9-61)||(7218105-7218157)
chr1 (1-45)||(15361692-15361736)
chr1 (9-57)||(17269237-17269285)
chr1 (10-58)||(17422972-17423020)
chr1 (8-44)||(23902115-23902151)
chr1 (10-58)||(27963404-27963452)
chr1 (15-59)||(35590925-35590969)
chr1 (1-61)||(44422678-44422738)
[»] chr7 (15 HSPs)
chr7 (1-56)||(24909643-24909698)
chr7 (1-59)||(24895335-24895393)
chr7 (3-45)||(25507330-25507372)
chr7 (15-61)||(46104598-46104644)
chr7 (3-40)||(25558243-25558280)
chr7 (3-40)||(25558441-25558478)
chr7 (1-61)||(17989054-17989114)
chr7 (9-61)||(30456481-30456533)
chr7 (1-59)||(27481327-27481385)
chr7 (1-42)||(9527140-9527181)
chr7 (9-62)||(18350737-18350790)
chr7 (9-58)||(46104646-46104695)
chr7 (1-61)||(1350273-1350333)
chr7 (3-59)||(36370650-36370706)
chr7 (3-59)||(44151513-44151569)
[»] chr5 (19 HSPs)
chr5 (1-44)||(15003562-15003605)
chr5 (1-59)||(18704069-18704127)
chr5 (9-59)||(37588393-37588443)
chr5 (9-61)||(2568645-2568697)
chr5 (1-61)||(41016158-41016218)
chr5 (1-44)||(34205218-34205261)
chr5 (9-56)||(36539733-36539780)
chr5 (9-59)||(37690669-37690720)
chr5 (9-47)||(19138764-19138802)
chr5 (7-61)||(34117567-34117621)
chr5 (9-59)||(37526232-37526282)
chr5 (4-45)||(15557294-15557335)
chr5 (10-59)||(29054896-29054945)
chr5 (2-59)||(32408625-32408682)
chr5 (4-61)||(34245706-34245763)
chr5 (9-58)||(39257421-39257470)
chr5 (1-42)||(39823171-39823212)
chr5 (14-42)||(10296406-10296434)
chr5 (9-61)||(18543227-18543279)
[»] scaffold0100 (1 HSPs)
scaffold0100 (10-59)||(42604-42653)
[»] scaffold0652 (1 HSPs)
scaffold0652 (4-44)||(2998-3038)
[»] scaffold0092 (1 HSPs)
scaffold0092 (17-61)||(40226-40270)
[»] scaffold0091 (1 HSPs)
scaffold0091 (9-61)||(6939-6991)


Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 55372433 - 55371882
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaacttacgtacatgttataagttttttcaagtagtctcact 100  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  55372433 tcaaactattatcatatgagctataagtagttttcataagctattatgaa-----------cttacgtacatgttataagttttttcaagtagtctcact 55372345  T
Q  101 aatatttataacaatagataaactcaaatatagcaatcaaaacatgttctataagtaagaagaggccccataattgtatgtatgtggttggtttgcattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  55372344 aatatttataacaatagataaactcaaatatagcaatcaaaacatggcttatgagtaagaagaggccccataattgtatgtatgtggttggtttgcattt 55372245  T
Q  201 agaaaagcctgttctcattgctttgaaccccacatgttactggtgctttagctttcattttctttaagtaccaaatgacacctccaattccaattgctcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  55372244 agaaaagcctgttctcattgctttgaaccccacatgttactggtgctttagctttcattttctttaagtaccaaatgccacctccaattccaagtgctcc 55372145  T
Q  301 aaaagctgaaatagcggtaactgtccctgcagccagaattccaaatccaacacacaaaacaaaaccacaaacataagcctaattttcaacttcaaaaacc 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55372144 aaaagctgaaatagcagtaactgtccctgcagccagaattccaaatccaacacacaaaacaaaaccacaaacataagcctaattttcaacttcaaaaacc 55372045  T
Q  401 ctggctttgtgaatattaattactactaattaagttcatttcaatcacctgcaattacatggacattcctactgtgccttgcattatcatgatctgccaa 500  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55372044 ctggctttgtgaatattaatt---actaattaagttcatttcaatcacctgcaattacatggacattcctactgtgccttgcattctcatgatctgccaa 55371948  T
Q  501 acaaataataaatccaattaaattaattcaaaaccatccaaaagttgttactcaatggtgtaataa 566  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  55371947 acaaataataaatccaattaaattaattcaaaaccatctaaaagttgttactcaatggtgcaataa 55371882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24444017 - 24444078
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaac 62  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| || | |||| ||||||    
T  24444017 tcaaacaattttcatataagctataagttgttttcataagctattgtggatagctaatgaac 24444078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 28615331 - 28615373
Alignment:
Q  19 agctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  28615331 agctataagttgttttcataagctataatgaagagcttatgaa 28615373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30207662 - 30207620
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagcta 43  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  30207662 tcaaactgttttcatataagctataagttgttttcataagcta 30207620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24160586 - 24160545
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagct 42  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  24160586 tcaaactattttcatgtaagctataagttgttttcataagct 24160545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 11802528 - 11802572
Alignment:
Q  16 ataagctataagtggttttcataagctattatgaagagcttatga 60  Q
    |||||||| |||| ||||||||||||||||||| |||||||||||    
T  11802528 ataagctacaagttgttttcataagctattatggagagcttatga 11802572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 29778782 - 29778834
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||| ||||| ||||||||||||||   |||||||||||||||    
T  29778782 ttttcatataagctgtaagttgttttcataagctaccttgaagagcttatgaa 29778834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42866047 - 42866090
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctat 44  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||    
T  42866047 tcaaactgtttttatataagctataagttgttttcataagctat 42866090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 49219118 - 49219161
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctat 44  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||    
T  49219118 tcaaattattttcatataagctataagttgttttcataaactat 49219161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 9841050 - 9841088
Alignment:
Q  6 ctattttcatataagctataagtggttttcataagctat 44  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  9841050 ctattttcatataagctataagatgttttcataagctat 9841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21157747 - 21157805
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||||| ||||||| |||||||||||  ||||||||| |||||  |||||||||||||    
T  21157747 tcaaactgttttcatgtaagctataagatgttttcatatgctatcctgaagagcttatg 21157805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49085968 - 49086010
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagcta 43  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||    
T  49085968 tcaaactattttcatacaagttataagttgttttcataagcta 49086010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 55870432 - 55870390
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagcta 43  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||    
T  55870432 tcaaactgttttcacataagctataagttgttttcataagcta 55870390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 927455 - 927516
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaac 62  Q
    ||||||| |||||||||||||||||| | |||| |||||||||| ||| | ||||| |||||    
T  927455 tcaaactgttttcatataagctataacttgtttgcataagctatcatggaaagcttttgaac 927516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 11842200 - 11842237
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctat 44  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  11842200 tattttcatataagctataagttgttttcataaactat 11842237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23819068 - 23819125
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||| |||||||||||| |||||   |||||||||||||||  ||||||||||||    
T  23819068 tcaaactgttttcatataagttataacatgttttcataagctatcttgaagagcttat 23819125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 28252217 - 28252266
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||||||||  |||||  ||||||||||||||| |||||||||||||    
T  28252217 ttttcatataagtaataaggagttttcataagctatcatgaagagcttat 28252266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 36722757 - 36722700
Alignment:
Q  4 aactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||| |||||||||||| ||||||| ||||| ||||| |||  |||||||||||||||    
T  36722757 aactgttttcatataagttataagttgttttgataagttatcctgaagagcttatgaa 36722700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 8468935 - 8468987
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||||| ||| ||||||||||| |||| |  ||||||||||||    
T  8468935 ttttcatataagctattagttgttttcataagttattctagagagcttatgaa 8468987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 10206247 - 10206199
Alignment:
Q  13 catataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||| ||||| | || |||||||||||| ||||||||||||||||    
T  10206247 catataagttataatttgtcttcataagctatcatgaagagcttatgaa 10206199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 27970043 - 27970095
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||| ||||| | ||||||||||||| | ||| ||||||||||    
T  27970043 tattttcatataagttataacttgttttcataagctgtcatggagagcttatg 27970095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 32421096 - 32421144
Alignment:
Q  13 catataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||||  |||| ||||||||||| |||||| ||||||||    
T  32421096 catataagctataagcagtttccataagctattttgaagaacttatgaa 32421144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 47119048 - 47118996
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||||||||| || |||||| |||||  |||||| ||||||||    
T  47119048 ttttcatataagctataagttgtattcatatgctatcttgaagaacttatgaa 47118996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10460582 - 10460638
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagctta 57  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  10460582 tcaaactattttcatacaagctataagtggttttcataagctatcatgtagagctta 10460638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35869816 - 35869877
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaac 62  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| || | |||| ||||||    
T  35869816 tcaaacaattttcatataagctataagttgttttcataagctattgtggatagctaatgaac 35869877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6864550 - 6864495
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagctt 56  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||| || |||||||    
T  6864550 tcaaactattttcatgtaagttataagttgttttcataagctattttggagagctt 6864495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29973060 - 29973103
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctat 44  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  29973060 tcaaactattttcacataagctataagttgttttcataagctat 29973103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 27754389 - 27754443
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||||| | | ||||||||||||||||||||||||| || ||||||||||||    
T  27754389 tattttcatgttaactataagtggttttcataagctattttggagagcttatgaa 27754443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28769430 - 28769372
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||||||||||| |||||||||||||  |||||||||||||||| || |||| |||||    
T  28769430 tcaaactattttcttataagctataagctgttttcataagctattttggagagtttatg 28769372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 31891884 - 31891928
Alignment:
Q  15 tataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||| |||||||||||||||  |||||||||||||    
T  31891884 tataagctataagttgttttcataagctatattgaagagcttatg 31891928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 9834872 - 9834837
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctat 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  9834872 ttttcatataagctataagttgttttcataagctat 9834837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 11795079 - 11795129
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||| ||||||  | ||||||||||||||||| ||||||||||    
T  11795079 ttttcatataagttataagctgatttcataagctattatggagagcttatg 11795129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 24558838 - 24558875
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctat 44  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  24558838 tattttcgtataagctataagttgttttcataagctat 24558875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 5227522 - 5227574
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||| ||||||||||||||  |||||  |||||||| ||||||||||||||||    
T  5227522 ttttaatataagctataagctgtttttgtaagctatcatgaagagcttatgaa 5227574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 11056755 - 11056723
Alignment:
Q  4 aactattttcatataagctataagtggttttca 36  Q
    ||||||||||||||||||||||||| |||||||    
T  11056755 aactattttcatataagctataagttgttttca 11056723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 31884581 - 31884625
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagag 53  Q
    |||||||||||||||||| | ||||||||||||||| ||| ||||    
T  31884581 ttttcatataagctataaattgttttcataagctatcatggagag 31884625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 47904154 - 47904098
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagctta 57  Q
    |||| |||||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  47904154 tcaagctattttcatataatctataagtggttttcataagctatcgtgaagagctta 47904098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 43875627 - 43875684
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||| || ||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  43875627 tcaaactgttctcatataagctataagttgttttcataagctatcatggagagcttat 43875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 14548804 - 14548754
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||||||||| ||||||||||| |||| || ||||||||||    
T  14548804 ttttcatataagctataagttgttttcataagttattctggagagcttatg 14548754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 20502157 - 20502100
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataagctattatgaagagcttatga 60  Q
    ||||| |||||||||| ||||||||  |||||||||||||||  ||||||||||||||    
T  20502157 aaactgttttcatatacgctataagctgttttcataagctatcctgaagagcttatga 20502100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27792851 - 27792908
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||||||||||||||||||  |||| |||||||||| |||| ||| |||||||||    
T  27792851 tcaaactattttcatataagctgcaagttgttttcataaactatcatgtagagcttat 27792908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43116519 - 43116478
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagct 42  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  43116519 tcaaacaattttcatataagctataagtcgttttcataagct 43116478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 33405250 - 33405198
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||||||||  |||||||||||||||  |||||| ||||||||    
T  33405250 ttttcatataagctataagctgttttcataagctatcttgaagaacttatgaa 33405198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48807687 - 48807731
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctatt 45  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  48807687 tcaaactattttcatagaagctataagttgttttcataagttatt 48807731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24235774 - 24235731
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctat 44  Q
    |||||||||||  ||||||||||||||| |||||||||||||||    
T  24235774 tcaaactatttgaatataagctataagttgttttcataagctat 24235731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 37788845 - 37788899
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctattatgaagagcttatgaac 62  Q
    ||||||| ||||| |||||||| |||||||||||||||| ||||||| ||||||||    
T  37788845 tattttcgtataatctataagttgttttcataagctatt-tgaagagtttatgaac 37788899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 41057025 - 41057060
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctat 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  41057025 ttttcatataagctataagttgttttcataagctat 41057060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28779335 - 28779368
Alignment:
Q  1 tcaaactattttcatataagctataagtggtttt 34  Q
    |||||||||||||||||||||||||||| |||||    
T  28779335 tcaaactattttcatataagctataagttgtttt 28779368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33965582 - 33965522
Alignment:
Q  1 tcaaactattttcatataa--gctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||||| |||||||||||  ||||||||  |||||||||||||||  |||||||||||||    
T  33965582 tcaaactgttttcatataaaagctataagatgttttcataagctatcttgaagagcttatg 33965522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 21865563 - 21865599
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctatt 45  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  21865563 ttttcatataagctataagttgttttgataagctatt 21865599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28306137 - 28306193
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagctta 57  Q
    ||||||| |||||||||||| || |||| |||||||||||||||   ||||||||||    
T  28306137 tcaaactgttttcatataagttacaagttgttttcataagctatacagaagagctta 28306193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 39228493 - 39228541
Alignment:
Q  11 ttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||||||| |||||| |||| ||  ||||||||||||||    
T  39228493 ttcatataagctataagttgttttcgtaagttaacatgaagagcttatg 39228541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 8516217 - 8516118
Alignment:
Q  198 tttagaaaagcctgttctcattgctttgaaccccacatgttactggtgctttagctttcattttctttaagtaccaaatgacacctccaattccaattgc 297  Q
    ||||||| || || || |||||| ||||||| |||||||| ||||||||  ||||| ||| |||||| |||||||||||  || ||||||||||||||||    
T  8516217 tttagaatagtctattatcattggtttgaactccacatgtgactggtgcagtagctctcaatttcttcaagtaccaaataccagctccaattccaattgc 8516118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 6227738 - 6227788
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||| |||||| ||||||||||||||||||||||||| || ||||||||||    
T  6227738 tttttatataaactataagtggttttcataagctattttggagagcttatg 6227788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 39983328 - 39983381
Alignment:
Q  8 attttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||||||||||||||||| |||||||||||||||  || |||||| |||||    
T  39983328 attttcatataagctataagttgttttcataagctatcctggagagctaatgaa 39983381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5043651 - 5043591
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||| ||| | |||| |||||    
T  5043651 tcaaactgttttcatataagctagaagttgttttcataagctatcatggatagctaatgaa 5043591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 15377752 - 15377804
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||| ||||||  |||||||||||||||| ||| |||||||||||    
T  15377752 ttttcatataagttataagctgttttcataagctattctgaggagcttatgaa 15377804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 11513885 - 11513920
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctat 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  11513885 ttttcatataagctataagttgttttcataagctat 11513920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17952792 - 17952749
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctat 44  Q
    ||||||||||||||||||||||| |||  |||||||||||||||    
T  17952792 tcaaactattttcatataagctacaagatgttttcataagctat 17952749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10143151 - 10143209
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||||| |||| |||||||||||||||  |||||||||||||| ||| |||| |||||    
T  10143151 tcaaactgtttttatataagctataagtttttttcataagctatcatggagagtttatg 10143209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40158697 - 40158755
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||||| ||||| ||||||| |||||| ||||||||||| |||| || ||||||||||    
T  40158697 tcaaactgttttcgtataagcaataagttgttttcataagttattctggagagcttatg 40158755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 43635186 - 43635132
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||| ||||| ||||||||| ||| ||||||||||| ||||| ||||||||||    
T  43635186 tatttttatatacgctataagttgttctcataagctatcatgaaaagcttatgaa 43635132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 13056136 - 13056173
Alignment:
Q  20 gctataagtggttttcataagctattatgaagagctta 57  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  13056136 gctataagttgttttcataagctattatggagagctta 13056173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 15780064 - 15780113
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||||||| |||||||| |||||||||||||||  || |||||||||    
T  15780064 ttttcatataatctataagttgttttcataagctatcgtgcagagcttat 15780113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 37292436 - 37292395
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataagctat 44  Q
    |||||||||||||||||||||| ||| |||||| ||||||||    
T  37292436 aaactattttcatataagctattagttgttttcttaagctat 37292395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 43985087 - 43985034
Alignment:
Q  8 attttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||| |||||  ||||||| |||||||||||||||  |||||||||||||||    
T  43985087 attttcgtataaattataagttgttttcataagctatcttgaagagcttatgaa 43985034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6993815 - 6993755
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||| ||| ||||||||||||||| || |||||||||||||||  |  ||||||||||||    
T  6993815 tcaaattatattcatataagctataggttgttttcataagctatgcttgagagcttatgaa 6993755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 7862739 - 7862775
Alignment:
Q  8 attttcatataagctataagtggttttcataagctat 44  Q
    ||||||||||||||||||||| | |||||||||||||    
T  7862739 attttcatataagctataagttggtttcataagctat 7862775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 8515996 - 8515936
Alignment:
Q  445 tcacctgcaattacatggacattcctactgtgccttgcattatcatgatctgccaaacaaa 505  Q
    |||||||| ||||||||||| |||||| |||||  |||| | || ||||||||||||||||    
T  8515996 tcacctgcgattacatggaccttcctattgtgctgtgcaatttcttgatctgccaaacaaa 8515936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13736384 - 13736324
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||| || |||||||||  |||||||||||||||  |  ||||||||||||    
T  13736384 tcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatgaa 13736324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33942129 - 33942169
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagc 41  Q
    ||||||| ||||||| |||||||||||| ||||||||||||    
T  33942129 tcaaactgttttcatgtaagctataagttgttttcataagc 33942169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36863716 - 36863656
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||| ||||| ||||||| ||||| | |||||||||||||||  || ||||||||||||    
T  36863716 tcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatgaa 36863656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 30533776 - 30533825
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  30533776 ttttcatataagttataagcagttttcataagctattatgaagagcttat 30533825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 1402977 - 1403032
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||| ||| |||||    
T  1402977 aaactattttcatataagctataaattgttttcataagctatcatggagatcttat 1403032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2117382 - 2117421
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataag 40  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  2117382 tcaaactattttcatataatctataagttgttttcataag 2117421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 24838828 - 24838777
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    |||||||||||||||||||||  | ||||||||||||| ||| |||||||||    
T  24838828 tattttcatataagctataagctgatttcataagctatcatggagagcttat 24838777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 31324437 - 31324492
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||||||||| |||||||||||  |  |||||||||||| |||||||||||||    
T  31324437 aaactattttcatgtaagctataagctgcattcataagctatcatgaagagcttat 31324492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10452451 - 10452413
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataa 39  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  10452451 tcaaactattttcatataagctataagttgtttccataa 10452413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 4246397 - 4246442
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagc 54  Q
    ||||||||||| |||||||  ||||||||||||||||||| |||||    
T  4246397 ttttcatataatctataagctgttttcataagctattatggagagc 4246442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 7485151 - 7485118
Alignment:
Q  9 ttttcatataagctataagtggttttcataagct 42  Q
    |||||||||||||||||||| |||||||||||||    
T  7485151 ttttcatataagctataagttgttttcataagct 7485118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 1401102 - 1401146
Alignment:
Q  15 tataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||  ||||||||||||||| ||| ||||||||||    
T  1401102 tataagctataagctgttttcataagctatcatggagagcttatg 1401146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 14282644 - 14282696
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||| ||||||  ||||| || |||||| ||||||||||||||    
T  14282644 tattttcatataaggtataagctgtttttatcagctatgatgaagagcttatg 14282696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4078240 - 4078180
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||  ||||| |||||    
T  4078240 tcaaactattttcatataatctataagttgttttcataagctatcatggcgagctaatgaa 4078180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10581168 - 10581121
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatg 48  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  10581168 tcaaacttttttcatttaagctataagttgttttcataagctattatg 10581121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47960715 - 47960660
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagctt 56  Q
    |||||||||||||||||||||||||||  ||||||||||| |||  ||||||||||    
T  47960715 tcaaactattttcatataagctataagccgttttcataagttatcctgaagagctt 47960660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 12564964 - 12564922
Alignment:
Q  2 caaactattttcatataagctataagtggttttcataagctat 44  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  12564964 caaactgttttcatataagctataagttgttttcataagctat 12564922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16322828 - 16322886
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||||| ||| ||||||  ||||||||| |||||| |||||||||||||    
T  16322828 tcaaactattttcatagaagttataagctgttttcataggctattttgaagagcttatg 16322886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48830167 - 48830113
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagct 55  Q
    ||||||||||||||||||||||||||   |||||||||||||||| | |||||||    
T  48830167 tcaaactattttcatataagctataaactgttttcataagctattctaaagagct 48830113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5150916 - 5150973
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||||||||||| |||| | ||| | ||||||||||||||| |||||||||||||    
T  5150916 tcaaactattttcatttaagttgtaatttgttttcataagctatcatgaagagcttat 5150973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 5592765 - 5592716
Alignment:
Q  12 tcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||||||||||||| |||||||||||||| | | |||||||||||||    
T  5592765 tcatataagctataagttgttttcataagctagtcttaagagcttatgaa 5592716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 25005880 - 25005831
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    |||||||||||||||||||| |||||||||||||||  || |||||||||    
T  25005880 ttttcatataagctataagttgttttcataagctatcctggagagcttat 25005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29007807 - 29007750
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    |||||||||||||||||||||||||||| ||||||||  |||| | |||| |||||||    
T  29007807 tcaaactattttcatataagctataagttgttttcatcggctactttgaaaagcttat 29007750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42556722 - 42556665
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||| ||| |||| ||||    
T  42556722 tcaaactacttttatataagctataagttgttttcataagctatcatggagagtttat 42556665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45205047 - 45205099
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagag 53  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||| ||| ||||    
T  45205047 tcaaactatttccatataagctagaagttgttttcataagctatcatgtagag 45205099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8130415 - 8130458
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctat 44  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||    
T  8130415 tcaaactgttttcacataagctataagttgttttcataagctat 8130458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 25006117 - 25006082
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctat 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  25006117 ttttcatataagctataagttgttttcataagctat 25006082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28467398 - 28467356
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagcta 43  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||    
T  28467398 tcaaattattttcatataagctacaagttgttttcataagcta 28467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27887209 - 27887156
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagc 54  Q
    |||||| |||| |||||||||||||||| |||||||||| |||| ||| |||||    
T  27887209 tcaaacaatttccatataagctataagttgttttcataaactatcatggagagc 27887156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 45107601 - 45107664
Alignment:
Q  1 tcaaactattttcatataagctata---agtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||||||||| ||||   ||| ||||||||||||||| | | ||||||||||||    
T  45107601 tcaaactattttcatataagttataattagtcgttttcataagctatcacggagagcttatgaa 45107664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 7218157 - 7218105
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||||||||| |||||||||| ||||  || ||| ||||||||    
T  7218157 ttttcatataagctataagttgttttcataacctatcctggagaacttatgaa 7218105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15361692 - 15361736
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctatt 45  Q
    ||||| |||||||||||||||||||||  ||||||||||| ||||    
T  15361692 tcaaattattttcatataagctataagctgttttcataagatatt 15361736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 17269237 - 17269285
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagctta 57  Q
    ||||||||||||| |||||| |||||||||||||||  || ||||||||    
T  17269237 ttttcatataagcaataagttgttttcataagctatcctggagagctta 17269285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 17423020 - 17422972
Alignment:
Q  10 tttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||||||||||||||| ||||||||| ||||| ||| |||| ||||    
T  17423020 tttcatataagctataagttgttttcatatgctatcatggagaggttat 17422972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 23902151 - 23902115
Alignment:
Q  8 attttcatataagctataagtggttttcataagctat 44  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  23902151 attttcatataagctataagttgttttcaaaagctat 23902115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 27963452 - 27963404
Alignment:
Q  10 tttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||| ||| | ||||| ||||||||||||||||||| |||||||||    
T  27963452 tttcataaaagttctaagttgttttcataagctattatggagagcttat 27963404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 35590969 - 35590925
Alignment:
Q  15 tataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||| | ||||||||||||| ||| ||||||||||    
T  35590969 tataagctataagtcgatttcataagctatcatggagagcttatg 35590925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44422678 - 44422738
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||| |||||||||||||||||||   |||| |||||||||  || ||||||||||||    
T  44422678 tcaaactgttttcatataagctataagctatttttataagctatcctggagagcttatgaa 44422738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24909643 - 24909698
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagctt 56  Q
    ||||| |||||||||||||||||||||| ||||||||||| |||| || |||||||    
T  24909643 tcaaattattttcatataagctataagttgttttcataagatattgtggagagctt 24909698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24895335 - 24895393
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||| |||||||||||||||||||||| ||||||| ||| |||| || ||||||||||    
T  24895335 tcaaattattttcatataagctataagttgttttcacaagatattgtggagagcttatg 24895393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 25507330 - 25507372
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataagctatt 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  25507330 aaactattttcatataagctataagttgttttcataagttatt 25507372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 46104644 - 46104598
Alignment:
Q  15 tataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||    
T  46104644 tataagctataagttgttttcataagctatgctgaagagcttatgaa 46104598  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 25558280 - 25558243
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataag 40  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25558280 aaactattttcatataagctataagttgttttcataag 25558243  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 25558478 - 25558441
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataag 40  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25558478 aaactattttcatataagctataagttgttttcataag 25558441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17989114 - 17989054
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||| ||||||||||| |||||| | ||||||||||||| |  |||||||||||||||    
T  17989114 tcaaactgttttcatataaactataatttgttttcataagctctcctgaagagcttatgaa 17989054  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 30456533 - 30456481
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||| |||||||||||||||||| ||||  || ||||||||||||    
T  30456533 ttttcatataagttataagtggttttcataaactatcttggagagcttatgaa 30456481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27481385 - 27481327
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||||| ||| ||||||||||||||||  |||||||||||||| ||| | ||||||||    
T  27481385 tcaaactgtttccatataagctataagttattttcataagctatcatggatagcttatg 27481327  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9527181 - 9527140
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagct 42  Q
    ||||||| ||||||||||| |||||||| |||||||||||||    
T  9527181 tcaaactgttttcatataaactataagttgttttcataagct 9527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 18350790 - 18350737
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaac 62  Q
    ||||| |||||| ||||||  ||||||||||||||| ||| |||||||||||||    
T  18350790 ttttcgtataagttataagctgttttcataagctatcatggagagcttatgaac 18350737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 46104695 - 46104646
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    |||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  46104695 ttttcatataagctataagttgttttcaaaagatatcttgaagagcttat 46104646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1350333 - 1350273
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||| |||||| |||| |||||||  |||||||||| ||||  |||||||||||||||    
T  1350333 tcaaacttttttcacataatctataagctgttttcataaactatcctgaagagcttatgaa 1350273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 36370650 - 36370706
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||| |||||| ||||||||||||| |||| ||||| ||||  |||||||||||||    
T  36370650 aaactgttttcacataagctataagttgtttccataaactatcctgaagagcttatg 36370706  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 44151569 - 44151513
Alignment:
Q  3 aaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||| ||| |||||||||||||||| |||||||||| ||||  |||| ||||||||    
T  44151569 aaactgtttccatataagctataagttgttttcataaactatcttgaaaagcttatg 44151513  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15003605 - 15003562
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctat 44  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  15003605 tcaaactctcttcatataagctataagtggttttcataagctat 15003562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18704127 - 18704069
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||  |||| ||||||    
T  18704127 tcaagctatttttatataagctataagttgttttcataagctattacaaagatcttatg 18704069  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 37588443 - 37588393
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||||||||| ||||||||||| |||| || ||||||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctggagagcttatg 37588393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 2568645 - 2568697
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||| |||||||||||||| ||||||||||||||| ||| |||||| |||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaa 2568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41016158 - 41016218
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||||| |||||||||||||||||||| ||||||| |||| || ||| | ||||||||||    
T  41016158 tcaaactgttttcatataagctataagttgttttcacaagccatcatggaaagcttatgaa 41016218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34205218 - 34205261
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagctat 44  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||    
T  34205218 tcaaattatttttatataagctataagttgttttcataagctat 34205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 36539733 - 36539780
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagctt 56  Q
    |||||||||||||||||||| ||||| ||||| |||| ||||||||||    
T  36539733 ttttcatataagctataagttgtttttataagttattctgaagagctt 36539780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 37690720 - 37690669
Alignment:
Q  9 ttttcatataagctataagtggttttcat-aagctattatgaagagcttatg 59  Q
    |||||||||||||||||||| |||||||| ||| ||||||| ||||||||||    
T  37690720 ttttcatataagctataagttgttttcataaagttattatggagagcttatg 37690669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 19138802 - 19138764
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattat 47  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  19138802 ttttcagataagctataagttgttttcataagctattat 19138764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 34117621 - 34117567
Alignment:
Q  7 tattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    ||||| |||||||||||||||| | |||||||||||||  || ||||||||||||    
T  34117621 tatttacatataagctataagttgctttcataagctatcttggagagcttatgaa 34117567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 37526282 - 37526232
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||||||||||||||||||| ||||||||||| | || || ||||||||||    
T  37526282 ttttcatataagctataagttgttttcataagttgttctggagagcttatg 37526232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 15557335 - 15557294
Alignment:
Q  4 aactattttcatataagctataagtggttttcataagctatt 45  Q
    |||||||||| |||||||||| ||| ||||||||||||||||    
T  15557335 aactattttcttataagctattagttgttttcataagctatt 15557294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 29054896 - 29054945
Alignment:
Q  10 tttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||||||||||||||||| |||| ||||| |||| ||| ||||||||||    
T  29054896 tttcatataagctataagttgtttccataaactatcatgtagagcttatg 29054945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 32408682 - 32408625
Alignment:
Q  2 caaactattttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    |||| ||||||||||||||||||||    ||||||||||||||  |||||||||||||    
T  32408682 caaattattttcatataagctataaactattttcataagctatcctgaagagcttatg 32408625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 34245706 - 34245763
Alignment:
Q  4 aactattttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||| |||| ||||||||||||||| ||||| ||||||||| ||| |||||| |||||    
T  34245706 aactgttttaatataagctataagttgtttttataagctatcatggagagctgatgaa 34245763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 39257470 - 39257421
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttat 58  Q
    ||||||||||| |||||||| |||||||||||| || ||| |||||||||    
T  39257470 ttttcatataaactataagttgttttcataagcaatcatggagagcttat 39257421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39823212 - 39823171
Alignment:
Q  1 tcaaactattttcatataagctataagtggttttcataagct 42  Q
    |||||||| |||||||||||||| |||| |||||||||||||    
T  39823212 tcaaactactttcatataagctacaagttgttttcataagct 39823171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 10296406 - 10296434
Alignment:
Q  14 atataagctataagtggttttcataagct 42  Q
    |||||||||||||||||||||||||||||    
T  10296406 atataagctataagtggttttcataagct 10296434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 18543279 - 18543227
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||| ||||||| ||||||| |||||||||||||||  || ||||||||||||    
T  18543279 tttttatataagatataagttgttttcataagctatcctggagagcttatgaa 18543227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 42604 - 42653
Alignment:
Q  10 tttcatataagctataagtggttttcataagctattatgaagagcttatg 59  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || |||||    
T  42604 tttcatataagctattagttgttttcataagctattatgaaaagtttatg 42653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 2998 - 3038
Alignment:
Q  4 aactattttcatataagctataagtggttttcataagctat 44  Q
    |||||||||| |||||||||||||| ||||| |||||||||    
T  2998 aactattttcgtataagctataagttgttttaataagctat 3038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 40226 - 40270
Alignment:
Q  17 taagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||||||||||| ||||||||||| |||  |||||||||||||||    
T  40226 taagctataagttgttttcataagttatcctgaagagcttatgaa 40270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 6939 - 6991
Alignment:
Q  9 ttttcatataagctataagtggttttcataagctattatgaagagcttatgaa 61  Q
    |||| ||||||||||||||  |||||  |||||||| ||||||||||||||||    
T  6939 ttttaatataagctataagctgtttttgtaagctatcatgaagagcttatgaa 6991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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