View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_11 (Length: 352)
Name: NF9313_low_11
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 22868444 - 22868761
Alignment:
| Q |
13 |
aaaataaaccttaaattctgcttttttatttccttcttgagtgatcttttattttaaagttcctagtcaattttgtgtgaacatggtgcatgaatgaata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22868444 |
aaaataaaccttaaattctgcttttttatttccttcttgagtgatctttt-----aaagttcctagtcaattttgtgtgaacatggtgcatgaatgaata |
22868538 |
T |
|
| Q |
113 |
tatatggttataaatgtcatttcatgaatctttccatatgggtaccaatgatgaaatcctatagaaacatggggttaccggtgtccggaggcaactatat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22868539 |
tatatggttataaatgtcatttcatgaatctttccatatgggtaccaatgatgaaatcctatagaaacatggggttactggtgtccggaggcaactatat |
22868638 |
T |
|
| Q |
213 |
tgatgatgcatgtcgatatatgaatccacattaggatctccatttaatgagtttatnnnnnnnnnnnnntatttaatgtactatgccaaaccaaacaacc |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
22868639 |
tgataatgcatgtcgatatatgaatccacattaggatctccatttaatgagtttataaaaagtaaaaaagatttaatgtactatgccaaacctaacaacc |
22868738 |
T |
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| Q |
313 |
attttgatttattgtgtggatcc |
335 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
22868739 |
tttttgatttattgtgtggatcc |
22868761 |
T |
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