View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_13 (Length: 339)
Name: NF9313_low_13
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 2201347 - 2201029
Alignment:
| Q |
11 |
agatggacatcaaagttcttaataaagtgtgaattgagagcctgcatatannnnnnnatcaaatataaggaactttgttaataaaacaggtaagtttttc |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2201347 |
agatagacatcaaagttcttaataaagtgtgaattgagagcctgcatttttttttttatcaaatataaggaactttgttaataaaacaggtaagtttttc |
2201248 |
T |
|
| Q |
111 |
gcataaattggtgaacttgggtgaaagttaacaaaaaatgccatattgacaaaaatgttgcaacttttctaacaacatcaaagtgtaaaatctcatgtac |
210 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2201247 |
gcataaattagtgaacttgggtgaaagttagcaaaaaatgccatattgacaaaaatgttgcaacttttctaacaacatcaaagtgtaaaatctcatgtac |
2201148 |
T |
|
| Q |
211 |
agtaggtttggaaaccaaaactcaattgcagttaagttaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcgtataaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2201147 |
agtaggtttggaaaccaaaactcaattgcagttaagttaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcgtataaa |
2201048 |
T |
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| Q |
311 |
ggaacacaatgatgtccat |
329 |
Q |
| |
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|||||||||||| |||||| |
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| T |
2201047 |
ggaacacaatgaagtccat |
2201029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 2214025 - 2213705
Alignment:
| Q |
11 |
agatggacatcaaagttcttaataaagtgtgaattgagagcctgcatatannnnnnnatcaaa-tataaggaactttgttaataaaacaggtaagttttt |
109 |
Q |
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|||| |||||||||||||||||||| ||||||||| ||| | ||||||| |||||| |||||||||||||||||||| |||||||||||||| |
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| T |
2214025 |
agatagacatcaaagttcttaataatgtgtgaatttagaacttgcatat-tttttttatcaaaatataaggaactttgttaatagtacaggtaagttttt |
2213927 |
T |
|
| Q |
110 |
cgcataaattggtgaacttgggtgaaagttaacaaaaaatgccatattgacaaaaatgttgcaacttttctaacaacatcaaagtgtaaaatctcatgta |
209 |
Q |
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||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2213926 |
cgcataaattggtgagcttgggtgaaagtcagcaaaaaatgccatattgacaaaaacgttgcaacttttctaataacatcaaagtgtaaaatctcatgta |
2213827 |
T |
|
| Q |
210 |
cagtaggtttggaaaccaaaactcaattgc--agttaagttaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcgtat |
307 |
Q |
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|| ||||||||||||||||| |||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2213826 |
caacaggtttggaaaccaaaattcaattgctaattgcggacaaagcaccatcactgtgtacaaacatgctaaacgtttacacatacctaaggtatcatat |
2213727 |
T |
|
| Q |
308 |
aaaggaacacaatgatgtccat |
329 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
2213726 |
aaaggaacacaatgaagtccat |
2213705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 41932140 - 41932180
Alignment:
| Q |
289 |
catacctaaggtatcgtataaaggaacacaatgatgtccat |
329 |
Q |
| |
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||||||||||||||| |||||||||||||||| | |||||| |
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| T |
41932140 |
catacctaaggtatcatataaaggaacacaataaagtccat |
41932180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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