View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_14 (Length: 297)
Name: NF9313_low_14
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 36083844 - 36083567
Alignment:
| Q |
1 |
gaagatgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaac |
100 |
Q |
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| T |
36083844 |
gaagatgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaac |
36083745 |
T |
|
| Q |
101 |
cacaccacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagtt |
200 |
Q |
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| T |
36083744 |
cacaccacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacgaccgcacaccattgaagtt |
36083645 |
T |
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| Q |
201 |
gaagttcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagttcaagca |
278 |
Q |
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| T |
36083644 |
gaagttcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagttcaagca |
36083567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 36149987 - 36149803
Alignment:
| Q |
52 |
tggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacaccacaaaatcataccatcgaaaatcaagttcacaacaaagagcaaga |
151 |
Q |
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| T |
36149987 |
tggaaattcaagcccacaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaaga |
36149888 |
T |
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| Q |
152 |
agaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctc |
239 |
Q |
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| T |
36149887 |
aaaagcacctctacttttaactataccacatccgcacaccattgaagttcaag--cac-gcaaagacgaagaagaagcacttctcctc |
36149803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 36083922 - 36083840
Alignment:
| Q |
5 |
atgtttgagaagccatgcaccctata-gtt-ttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaaga |
85 |
Q |
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| T |
36083922 |
atgtttgagaagccatgcgccctataagttcttttattactacttactttggaagttcaagttcacaaagggcaaaaagaaga |
36083840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 278
Target Start/End: Complemental strand, 36149972 - 36149833
Alignment:
| Q |
139 |
acaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcct |
238 |
Q |
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| T |
36149972 |
acaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaagaaaaagcacctctact |
36149873 |
T |
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| Q |
239 |
cttaatcacaccacaaccggacaccatggaagttcaagca |
278 |
Q |
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| T |
36149872 |
tttaactataccacatccgcacaccattgaagttcaagca |
36149833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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