View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9313_low_15 (Length: 266)

Name: NF9313_low_15
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9313_low_15
NF9313_low_15
[»] chr3 (5 HSPs)
chr3 (9-254)||(29223266-29223514)
chr3 (9-161)||(52616421-52616573)
chr3 (18-162)||(41523489-41523633)
chr3 (9-77)||(11758939-11759007)
chr3 (9-106)||(51846889-51846986)
[»] chr2 (2 HSPs)
chr2 (18-160)||(15573349-15573491)
chr2 (9-98)||(29075916-29076005)
[»] chr4 (2 HSPs)
chr4 (9-160)||(13736514-13736665)
chr4 (18-160)||(26889294-26889436)
[»] chr7 (4 HSPs)
chr7 (9-160)||(8942945-8943096)
chr7 (9-78)||(38656963-38657032)
chr7 (9-74)||(13926055-13926119)
chr7 (91-160)||(15746664-15746733)
[»] chr1 (1 HSPs)
chr1 (9-77)||(27052624-27052692)
[»] chr8 (1 HSPs)
chr8 (95-160)||(45483073-45483138)
[»] chr6 (4 HSPs)
chr6 (91-160)||(1569578-1569647)
chr6 (9-74)||(629884-629949)
chr6 (9-66)||(2196936-2196992)
chr6 (26-74)||(24016767-24016815)
[»] chr5 (2 HSPs)
chr5 (9-69)||(22292705-22292764)
chr5 (9-75)||(13578929-13578995)
[»] scaffold1603 (1 HSPs)
scaffold1603 (9-66)||(192-248)
[»] scaffold0031 (1 HSPs)
scaffold0031 (9-74)||(91205-91269)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 29223266 - 29223514
Alignment:
Q  9 agcagagataataaat-ggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtg--tttttaccaccagctgttcaaaaa 105  Q
    |||||| ||||||||| ||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||  |||||    
T  29223266 agcagaaataataaattggaatattttacaatataatatgtttcattaaaatattcctgcagataaaaaatgtgtgtttttaccaccaactgtcaaaaaa 29223365  T
Q  106 tctttcccttgtacatgatgcacaaattttccccttgtgcaccctaaatgtcaccattgcatctatagttgcggaaaatctcagcaatatgccaaagtta 205  Q
      |||||||| | ||||||||| |||| |||||||| | |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||    
T  29223366 aatttcccttatgcatgatgcataaatcttccccttatacaccctaaatgtcaccgttgcacctgtagttgcggaaaatctcagcaatatgccaaagtta 29223465  T
Q  206 aggttccacctataattgagaatccttttggtaatatcaaagttgatgt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29223466 aggttccacctataattgagaatccttttggtaatatcaaagttgatgt 29223514  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 52616421 - 52616573
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtgtttttaccaccagctgttcaaaaatct 108  Q
    |||||| | ||||||||||||||| |  |||||||||| |||||||||||||||||||||| |||||| ||  |||||||| ||| |||| |||||||||    
T  52616421 agcagaaacaataaatggaatattatacaatataatatttttcattaaaatattccagcaggtaaaaattgcttttttaccgccacctgtccaaaaatct 52616520  T
Q  109 ttcccttgtacatgatgcacaaattttccccttgtgcaccctaaatgtcacca 161  Q
       |||||| |||| ||||||||| |||||||||||||||||||||| |||||    
T  52616521 aagccttgtgcatggtgcacaaatcttccccttgtgcaccctaaatgccacca 52616573  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 41523489 - 41523633
Alignment:
Q  18 aataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtgtttttaccaccagctgttcaaaaatctttcccttgt 117  Q
    |||||||||||||||||  |||||||||| ||||||||||||||| || ||| |||||| ||  |||||||| |||||||| |||||||| ||| |||||    
T  41523489 aataaatggaatattttacaatataatatttttcattaaaatatttcaacaggtaaaaattgcttttttaccgccagctgtccaaaaatcgttcacttgt 41523588  T
Q  118 acatgatgcacaaattttccccttgtgcaccctaaatgtcaccat 162  Q
     |||| | ||||||| ||| |||||||||||||||||| ||||||    
T  41523589 gcatggtacacaaatcttctccttgtgcaccctaaatgccaccat 41523633  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 11759007 - 11758939
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaa 77  Q
    |||||| | |||||||||||||||||  ||||| ||||||||||||||||| ||||||||| |||||||    
T  11759007 agcagaaacaataaatggaatattttacaatattatatgtttcattaaaatgttccagcaggtaaaaaa 11758939  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 51846986 - 51846889
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtgtttttaccaccagctgttcaaaaat 106  Q
    |||||| | |||||||| ||||||||  |||||||||| ||| |||||||||||||||||| ||||||  |  |||||||| ||| |||| |||||||    
T  51846986 agcagaaacaataaatgaaatatttttcaatataatatttttgattaaaatattccagcaggtaaaaagggaatttttaccgccacctgtccaaaaat 51846889  T

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Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 15573349 - 15573491
Alignment:
Q  18 aataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtgtttttaccaccagctgttcaaaaatctttcccttgt 117  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||| |||||||||||| |||||    
T  15573349 aataaatggaatattttacaatataatatgtttcattaaaatattccagcaggtaaaaaaggtgtttttaccgccaactgtccaaaaatctttcacttgt 15573448  T
Q  118 acatgatgcacaaattttccccttgtgcaccctaaatgtcacc 160  Q
     |||| ||||||||| ||||||||||||| |||||||| ||||    
T  15573449 gcatggtgcacaaatcttccccttgtgcatcctaaatgccacc 15573491  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 29075916 - 29076005
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtgtttttaccaccagctgt 98  Q
    |||||| | |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||   |||||||| ||||||||    
T  29075916 agcagaaacaataaatggaatattttacaatataatatgtttcattaaaatattccagcaggtaaaaaatcaatttttaccgccagctgt 29076005  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 13736665 - 13736514
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtgtttttaccaccagctgttcaaaaatct 108  Q
    |||||| | |||||||||||||||||  |||||||||||||||||||||||||||||| ||  |||||| ||||||||||| | |||||| |||||||||    
T  13736665 agcagaaacaataaatggaatattttacaatataatatgtttcattaaaatattccagaagggaaaaaaggtgtttttaccgctagctgtccaaaaatct 13736566  T
Q  109 ttcccttgtacatgatgcacaaattttccccttgtgcaccctaaatgtcacc 160  Q
    ||| ||||| |||| ||||||||| ||||| |||||||||||||||| ||||    
T  13736565 ttcacttgtgcatggtgcacaaatcttccctttgtgcaccctaaatgccacc 13736514  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 26889294 - 26889436
Alignment:
Q  18 aataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtgtttttaccaccagctgttcaaaaatctttcccttgt 117  Q
    |||||||||||||||||  |||||||||| ||| |||||||||||||||||| ||||||  |  |||||||| ||| || | |||||||||    |||||    
T  26889294 aataaatggaatattttacaatataatatttttgattaaaatattccagcaggtaaaaagggaatttttaccgccacctatccaaaaatctaagacttgt 26889393  T
Q  118 acatgatgcacaaattttccccttgtgcaccctaaatgtcacc 160  Q
     |||| ||||||||| |||||||||||||||||||||| ||||    
T  26889394 gcatggtgcacaaatcttccccttgtgcaccctaaatgccacc 26889436  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 8943096 - 8942945
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaatgtgtttttaccaccagctgttcaaaaatct 108  Q
    |||||| | |||||||||||||||||  |||||||||| ||| |||||||||||||||||| ||||||  |  |||||||| ||| |||| |||||||||    
T  8943096 agcagaaacaataaatggaatattttacaatataatatttttgattaaaatattccagcaggtaaaaagggaatttttaccgccacctgtccaaaaatct 8942997  T
Q  109 ttcccttgtacatgatgcacaaattttccccttgtgcaccctaaatgtcacc 160  Q
        ||||| |||| ||||||||| |||||||||||||||||||||| ||||    
T  8942996 aagacttgtgcatggtgcacaaatcttccccttgtgcaccctaaatgccacc 8942945  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 38657032 - 38656963
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaat 78  Q
    |||||| | |||||||  ||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  38657032 agcagaaacaataaataaaatattttacaatataatatgtttcattaaaatattccagcaggtaaaaaat 38656963  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 13926055 - 13926119
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaa 74  Q
    |||||| | |||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  13926055 agcagaaacaataaatg-aatattttataatataatatgttttattaaaatattccagcaggtaaa 13926119  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 15746664 - 15746733
Alignment:
Q  91 ccagctgttcaaaaatctttcccttgtacatgatgcacaaattttccccttgtgcaccctaaatgtcacc 160  Q
    |||||||| |||||||||||||||||| |||| ||||||||| || ||||||||||  ||||||| ||||    
T  15746664 ccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 15746733  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 27052624 - 27052692
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaaaa 77  Q
    |||||| | |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  27052624 agcagaaacaataaatggaatattttacaatataatatgtttcattaaaatattccagcaggtaaaaaa 27052692  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 45483073 - 45483138
Alignment:
Q  95 ctgttcaaaaatctttcccttgtacatgatgcacaaattttccccttgtgcaccctaaatgtcacc 160  Q
    ||||||||||||||||| |||||   || ||||||||| |||||||||||||||||||||| ||||    
T  45483073 ctgttcaaaaatctttcacttgtgtttggtgcacaaatcttccccttgtgcaccctaaatgccacc 45483138  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 1569647 - 1569578
Alignment:
Q  91 ccagctgttcaaaaatctttcccttgtacatgatgcacaaattttccccttgtgcaccctaaatgtcacc 160  Q
    |||||||| |||||||||||||||||| |||| ||||||||| || ||||||||||  ||||||| ||||    
T  1569647 ccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 1569578  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 629949 - 629884
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaa 74  Q
    |||||| | ||||||||||||||| |  |||||||||| ||| |||||||||||||||||| ||||    
T  629949 agcagaaacaataaatggaatattatacaatataatatttttgattaaaatattccagcaggtaaa 629884  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 2196936 - 2196992
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccag 66  Q
    |||||| | |||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  2196936 agcagaaacaataaatg-aatattttacaatataatatgtttcattaaaatattccag 2196992  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 24016815 - 24016767
Alignment:
Q  26 gaatattttgtaatataatatgtttcattaaaatattccagcagataaa 74  Q
    |||||||||  |||||||||||||||||||||||| |||||||| ||||    
T  24016815 gaatattttacaatataatatgtttcattaaaataatccagcaggtaaa 24016767  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 22292705 - 22292764
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcag 69  Q
    |||||| | |||||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  22292705 agcagaaacaataaatg-aatattttacaatataatatgtttcattaaaatattccagcag 22292764  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 13578929 - 13578995
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaaa 75  Q
    |||||| |||||||||||||||||||  | |||||||| ||| |||| ||||||||||||| |||||    
T  13578929 agcagaaataataaatggaatattttacattataatatttttgattagaatattccagcaggtaaaa 13578995  T

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Target: scaffold1603 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 192 - 248
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccag 66  Q
    |||||| | |||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  192 agcagaaacaataaatg-aatattttacaatataatatgtttcattaaaatattccag 248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 91205 - 91269
Alignment:
Q  9 agcagagataataaatggaatattttgtaatataatatgtttcattaaaatattccagcagataaa 74  Q
    |||||| | |||||||| ||||||||  |||||||||||||||||||||||| |||||||| ||||    
T  91205 agcagaaacaataaatg-aatattttacaatataatatgtttcattaaaataatccagcaggtaaa 91269  T

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