View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_16 (Length: 250)
Name: NF9313_low_16
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42524176 - 42523931
Alignment:
| Q |
1 |
cttaatgcaaatggatgctcaccatccaacacctgtaaaaagacata---attagtttatcttaatataacaaaaacaatgactcttagaataaataaaa |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42524176 |
cttaatgcaaatggatgctcaccatccaacacctgtaaaaagacatagtaattagtttatcttaatataacaaaaacaatgactcttagaataaataaaa |
42524077 |
T |
|
| Q |
98 |
attaatgtttttctatt--------tatataacctaaaatattataggacatgcgagaaaacaataatatgggaaaaacattctcttatcctaaagcata |
189 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42524076 |
attaatgtttttctattgttcatattatataacctaaaatattataggacatgcgagaaaccaataatatgggaaaaacattctcttatcctaaagcata |
42523977 |
T |
|
| Q |
190 |
tttcaattaaaagaaacatgatctaacctttgatctattaattgat |
235 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42523976 |
tttcaattaaaagaaacttgatctaacctttgatctattaattgat |
42523931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42517521 - 42517277
Alignment:
| Q |
1 |
cttaatgcaaatggatgctcaccatccaacacctgtaaaaagacataatta--gtttatcttaatataacaaaaacaatgactcttagaataaataaaaa |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42517521 |
cttaatgcaaatggatgctcaccatccaacacctgtaaaaagacatagtaattgtttatcttaatataacaaaaacaatgactcttagaataaataaaaa |
42517422 |
T |
|
| Q |
99 |
ttaatgtttttctatt--------tatataacctaaaatattataggacatgcgagaaaacaataatatgggaaaaacattctcttatcctaaagcatat |
190 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
42517421 |
ttaatgtttttctattgttcatattatataacctaaaatattataggacatgcgagaaaccaataatatgggaaaaacattatcttatcctaaagcatat |
42517322 |
T |
|
| Q |
191 |
ttcaattaaaagaaacatgatctaacctttgatctattaattgat |
235 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42517321 |
ttcaattaaaagaaacttgatctaacctttgatctattaattgat |
42517277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 42507880 - 42507760
Alignment:
| Q |
117 |
tataacctaaaatattataggacatgcgagaaaacaataatatgggaaaaacat----tctcttatcctaaagcatatttcaattaaaagaaacatgatc |
212 |
Q |
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|||||||||||| ||||||||||| | || ||| |||||| ||||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
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| T |
42507880 |
tataacctaaaaaattataggacacgtgataaaccaataacatgggaaaaacatatattgtgttatcctaaagcatatttcaattcaaagaaacatgatc |
42507781 |
T |
|
| Q |
213 |
taacctttgatctattaattg |
233 |
Q |
| |
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||||||||||||||||||||| |
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| T |
42507780 |
taacctttgatctattaattg |
42507760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42508060 - 42508015
Alignment:
| Q |
1 |
cttaatgcaaatggatgctcaccatccaacacctgtaaaaagacat |
46 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
42508060 |
cttaatgcaaatggatgctcaccacccaaaacctgtaaaaagacat |
42508015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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