View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_18 (Length: 237)
Name: NF9313_low_18
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42508058 - 42508281
Alignment:
| Q |
1 |
aagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctaatgaactgaagatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42508058 |
aagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctgatgaactgaagatg |
42508157 |
T |
|
| Q |
101 |
gaagctcgaatccattgcataactggaaaaacttcgttgggcatgaaagcaaccatgtagatgagatgttgaacacacaagatttgttattttatcacct |
200 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
42508158 |
gaagctcaaatccattgcataactgaaaaaacttcgttgggcatgaaagcaactatgtagatgagaggatgaacacacaagatttgttattttatcacct |
42508257 |
T |
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| Q |
201 |
tcatagcttagctaattgtaaagt |
224 |
Q |
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|||||||||||||| ||||||||| |
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| T |
42508258 |
tcatagcttagctagttgtaaagt |
42508281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42524174 - 42524397
Alignment:
| Q |
1 |
aagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctaatgaactgaagatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42524174 |
aagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctgatgaactgaagatg |
42524273 |
T |
|
| Q |
101 |
gaagctcgaatccattgcataactggaaaaacttcgttgggcatgaaagcaaccatgtagatgagatgttgaacacacaagatttgttattttatcacct |
200 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
42524274 |
gaagctcaaatccattgcataactgaaaaaacttcgttgggcatgaaagcaaccatgtagatgagaggatgaacacacaagatttgttattttattacct |
42524373 |
T |
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| Q |
201 |
tcatagcttagctaattgtaaagt |
224 |
Q |
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|||||||||||||| ||||||||| |
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| T |
42524374 |
tcatagcttagctagttgtaaagt |
42524397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 42517519 - 42517682
Alignment:
| Q |
1 |
aagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctaatgaactgaagatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42517519 |
aagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctgatgaactgaagatg |
42517618 |
T |
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| Q |
101 |
gaagctcgaatccattgcataactggaaaaacttcgttgggcatgaaagcaaccatgtagatga |
164 |
Q |
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||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
42517619 |
gaagctcaaatccattgcataactgaaaaaactttgttgggcatgaaagcaactatgtagatga |
42517682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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