View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_20 (Length: 232)
Name: NF9313_low_20
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 52971877 - 52971662
Alignment:
| Q |
1 |
tcataagcatattctttctaccatttctgctacatgcaccttcctccctctttccaagatgaccaatttagcttctccaatggtccaagttacaacttct |
100 |
Q |
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| T |
52971877 |
tcataggcatattctttctaccatttctgctacatgcaccttcctccctctttccaagatgaccaatttagcttctccaatggtccaagttacaacttct |
52971778 |
T |
|
| Q |
101 |
gaattatataaccaacctttcatccaccttcttaaaccataataacaagttttctaatcttcataggctaaataaaaacttaacaattttaacttaacct |
200 |
Q |
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| T |
52971777 |
gaattatataaccaacctttcatccaccttcttaaaccataataacaagttttctaatcttcgtaggctaaataaaaacttaacaattttaacttaacct |
52971678 |
T |
|
| Q |
201 |
tgtagaagcaatggct |
216 |
Q |
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|||||||||||||||| |
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| T |
52971677 |
tgtagaagcaatggct |
52971662 |
T |
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