View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_7 (Length: 397)
Name: NF9313_low_7
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 32 - 381
Target Start/End: Original strand, 52577183 - 52577532
Alignment:
| Q |
32 |
gcagaacctgtggcaattaaattaaatgcacaagatgaacttgatacctgctttcccatcagaccattggcagcattctctaaccaactatcagtcacag |
131 |
Q |
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| T |
52577183 |
gcagaacttgtggcaattaaattacatgcacaagatgaacttgatacctgctttcccatcagaccattggcagcattctctaaccaactatccgtcacag |
52577282 |
T |
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| Q |
132 |
tctgtagagaataagttgtttacatacgaaaaataaaaccttgtaagataattgtttacatttaaatcatcttcaaacagtactccctnnnnnnnttaat |
231 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
52577283 |
tctgtagagaataagttgtttacataccaaaaataaaacctagtaagataattgtttacatttaaatcatcttcaaacagtactccttaaaaaaattaat |
52577382 |
T |
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| Q |
232 |
ttcaaatgagaaaaacaaaattatcagttggaactcttcgtttgtatttcaaaatctacctgtgaattccatatcatctgccattcgccctcttctagtt |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577383 |
ttcaaatgagaaaaacaaaattatcagttggaactcttcgtttgtatttcaaaatctacctgtgaattccatatcatctgccattcgccctcttctagtt |
52577482 |
T |
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| Q |
332 |
ctggatcttcttccccagaattcttatttaaggaaatgagtttatctatt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577483 |
ctggatcttcttccccagaattcttatttaaggaaatgagtttatctatt |
52577532 |
T |
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