View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_8 (Length: 391)
Name: NF9313_low_8
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 388
Target Start/End: Complemental strand, 52433017 - 52432633
Alignment:
| Q |
7 |
ttggtggttgaaataagaaaaagaagaggggttatgcctggtctggtggtgtatatagtaactaataactagctagcaagcgttgaagtagaactacaat |
106 |
Q |
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| T |
52433017 |
ttggtggttgaaataagaaaaagaagaggggttatgcctggtctggtggtgtatatagtaactactaactagctagcaaacgttgaagtagaactaaaat |
52432918 |
T |
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| Q |
107 |
acaacctcacatacattcacgagtcactttcaatatgggtnnnnnnngcacacgcggggtcaccatatatatgtatgtatgtatccctttatttattacg |
206 |
Q |
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| T |
52432917 |
acaacctcacatacattcacgagtcactttcaatatgggt---aaaagcacacgcggggtcacca--------tatgtatgtatccctttatttattacg |
52432829 |
T |
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| Q |
207 |
gtcatatgatatgcagttatgcagtatgcatcatggaaaatgttatggtgtttaaacttaa--------------agttttataattgaaagtttggata |
292 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52432828 |
gtcatatgatatgcagttatgcagtatgcatcttggaaaatgttatggtgtttaaacttaaaattatgaaaaatgagttttataattgaaagtttggata |
52432729 |
T |
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| Q |
293 |
taaagtaaataaagtttgaccaaaaattgatgaaaaagatcgaggggagttaaagagcacggtgatgagaaagttgataattcaaactccaaactc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52432728 |
taaagtaaataaagtttgaccaaaaattgatgaaaaagatcgaggggagttaaagagcactgtgatgagaaagttgataattcaaactccaaactc |
52432633 |
T |
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