View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9313_low_9 (Length: 358)
Name: NF9313_low_9
Description: NF9313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9313_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 32104512 - 32104170
Alignment:
| Q |
11 |
tgttcacattggatggcctttgtatcgcaaatatggtcatgcttttgaggtaacatcttctcttaacactctttgatggtttcttgctaggttctaaaaa |
110 |
Q |
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| T |
32104512 |
tgttcacattggatggcctttgtatcgcaaatatggtcatgcttttgaggtaacatcttctcttaacactct-----ggtttcttgctaggttctaaaaa |
32104418 |
T |
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| Q |
111 |
tggtcgatgccaccgtgaaaacggctgaaaccaaaatggcattggtatcgtagatattgtttttctccat---------atcaacaaaacagacttataa |
201 |
Q |
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| T |
32104417 |
tggtcgatgccaccgtgaaaatggctgaaaccaaaattgcattggtattgtagatattgtttttctccgttttaacctagtgaacaaaacagacttataa |
32104318 |
T |
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| Q |
202 |
tttgggacaa--nnnnnnncttttcaaatagacttataa-ttggttt----ggaggcagaatatgatagcataaataattttaataa-gtttgtgccatg |
293 |
Q |
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| T |
32104317 |
tttgggacaatttttttctcttttcaaatagacttataatttggattggagggaggcagtatatgatagcataaataattttaataacgtttgtgccatg |
32104218 |
T |
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| Q |
294 |
ttgtgattaatttacaccgcgactgcaacaatccgtaacagctgaaat |
341 |
Q |
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| T |
32104217 |
ttgtgattaatttacaccgcgactacaacaatccgtaatagctgaaat |
32104170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 32118290 - 32118238
Alignment:
| Q |
11 |
tgttcacattggatggcctttgtatcgcaaatatggtcatgcttttgaggtaa |
63 |
Q |
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| T |
32118290 |
tgttcacattggatggcctttgtatcgcaaatatggtcatgcttttgaggtaa |
32118238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 32110271 - 32110223
Alignment:
| Q |
15 |
cacattggatggcctttgtatcgcaaatatggtcatgcttttgaggtaa |
63 |
Q |
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| T |
32110271 |
cacattggatggcctttgtatcgcaaatatggccatgcttttgaggtaa |
32110223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 26828575 - 26828637
Alignment:
| Q |
255 |
atatgatagcataaataattttaataag-tttgtgccatgttgtgattaatttacaccgcgac |
316 |
Q |
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| T |
26828575 |
atatgttagtataaataagtttaataaaatttgtgcaatgttgtgattaatttacaccgcgac |
26828637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 32617602 - 32617570
Alignment:
| Q |
284 |
ttgtgccatgttgtgattaatttacaccgcgac |
316 |
Q |
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| T |
32617602 |
ttgtgcaatgttgtgattaatttacaccgcgac |
32617570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 42237612 - 42237561
Alignment:
| Q |
265 |
ataaataattttaataag-tttgtgccatgttgtgattaatttacaccgcga |
315 |
Q |
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| T |
42237612 |
ataaataattttaataagatttgtgcaatgttgtggttaattcacaccgcga |
42237561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 13396929 - 13396979
Alignment:
| Q |
291 |
atgttgtgattaatttacaccgcgactgcaacaatccgtaacagctgaaat |
341 |
Q |
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| T |
13396929 |
atgttgtgattaattcacaccgcgacagccgcaatccataacagctgaaat |
13396979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 13402227 - 13402277
Alignment:
| Q |
291 |
atgttgtgattaatttacaccgcgactgcaacaatccgtaacagctgaaat |
341 |
Q |
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| T |
13402227 |
atgttgtgattaattcacaccgcgacaaccgcaatccgtaacagctgaaat |
13402277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 6134271 - 6134223
Alignment:
| Q |
258 |
tgatagcataaataattttaataag-tttgtgccatgttgtgattaatt |
305 |
Q |
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| T |
6134271 |
tgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt |
6134223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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