View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9315_low_1 (Length: 689)

Name: NF9315_low_1
Description: NF9315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9315_low_1
NF9315_low_1
[»] chr1 (4 HSPs)
chr1 (223-689)||(28388658-28389120)
chr1 (4-123)||(28388457-28388573)
chr1 (583-676)||(4549462-4549555)
chr1 (581-662)||(36070251-36070332)
[»] chr7 (5 HSPs)
chr7 (318-406)||(40824357-40824445)
chr7 (580-647)||(22283564-22283630)
chr7 (629-675)||(28520979-28521025)
chr7 (578-647)||(11782959-11783027)
chr7 (581-670)||(30535625-30535714)
[»] chr6 (5 HSPs)
chr6 (584-666)||(32171533-32171615)
chr6 (583-670)||(26559160-26559247)
chr6 (581-675)||(281767-281861)
chr6 (581-634)||(29249491-29249544)
chr6 (581-669)||(2460070-2460158)
[»] chr5 (3 HSPs)
chr5 (623-675)||(7674705-7674757)
chr5 (581-664)||(41830920-41831003)
chr5 (626-667)||(19460350-19460391)
[»] chr4 (2 HSPs)
chr4 (581-664)||(54426112-54426194)
chr4 (581-669)||(27123271-27123359)
[»] chr2 (5 HSPs)
chr2 (581-664)||(9996806-9996889)
chr2 (581-664)||(22878166-22878249)
chr2 (581-634)||(15370242-15370295)
chr2 (582-631)||(16785280-16785329)
chr2 (581-661)||(18179021-18179100)
[»] chr8 (3 HSPs)
chr8 (580-634)||(14926900-14926954)
chr8 (583-669)||(39551130-39551216)
chr8 (581-634)||(43368619-43368672)
[»] chr3 (2 HSPs)
chr3 (587-689)||(26542580-26542681)
chr3 (641-681)||(26808174-26808214)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 223 - 689
Target Start/End: Original strand, 28388658 - 28389120
Alignment:
Q  223 ctataatccatatatgtatatacttcactgatcatacagttacatttaaccaattaagnnnnnnnnc-------------cttccctttttgtacagaat 309  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||        |             ||||||||||||||||||||    
T  28388658 ctataatccatagatgtatatacttcactgatcatacagttacatttaaccaattaagttttttttctttcttttttttccttccctttttgtacagaat 28388757  T
Q  310 ggcgtccacatccaacaggggtcaaggaggaattcagcaattgttggctgctgagcaagaagcacaacggattgtgaatgctgcgaaaaatggtattttg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28388758 ggcgtccacatccaacaggggtcaaggaggaattcagcaattgttggctgctgagcaagaagcacaacggattgtgaatgctgcgaaaaatggtattttg 28388857  T
Q  410 ttcttttcattatttatcatgtcctgtacccatgttc-ttgctcctgtttgccatgatgatttcatccaattatactatgggtcttcattcagtcaattt 508  Q
    ||||||||||||||||||||||||||||||||||||| ||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28388858 ttcttttcattatttatcatgtcctgtacccatgttctttgctc-----tgccatgatgatttcatccaattatactatgggtcttcattcagtcaattt 28388952  T
Q  509 tatatgtccaactaaatcccactttagactagctttgaacttctaggactaggaggttttcaactaaaagtttgtttggattgacttatttgatattatt 608  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  28388953 tatatgtccaactaaatctcactttagactagctttgaacttctaggactaggaggttttcaactaaaagtttgtttggattgacttatt---------- 28389042  T
Q  609 gactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgtttataaaatgttgtcaactt 689  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28389043 ---tgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgtttataaaatgttgtcaactt 28389120  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 28388457 - 28388573
Alignment:
Q  4 tcattttgattcatgtgatgtttgcatcagtgcgaaattctacacaaattacttgcttatgttatagttgaattggacaggattattatacccttggtac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  28388457 tcattttgattcatgtgatgtttgcatcagtgcgaaattctacacaaattacttgcttatgttatagttgaattggacagg---attatacccttggtac 28388553  T
Q  104 attcaatttggtcttgattt 123  Q
    ||||||||||||||||||||    
T  28388554 attcaatttggtcttgattt 28388573  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 676
Target Start/End: Original strand, 4549462 - 4549555
Alignment:
Q  583 tttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgtttataaa 676  Q
    ||||||||| ||||||||| |||||  |||| |||||| |||| |||||||| || ||||| |||   |||||||||||||| |||| ||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttatgacatgtctataaa 4549555  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 662
Target Start/End: Complemental strand, 36070332 - 36070251
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttat 662  Q
    |||||||||||  ||||||||||||||   ||| |||||| | ||||||||||| ||||||||||||  | |||||||||||    
T  36070332 tgtttggattggtttatttgatattatcttctggcataagcacttgtgagactgtttaggagaacttatgaaaacaacttat 36070251  T

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Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 40824445 - 40824357
Alignment:
Q  318 catccaacaggggtcaaggaggaattcagcaattgttggctgctgagcaagaagcacaacggattgtgaatgctgcgaaaaatggtatt 406  Q
    |||||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||  |||||||||||||||||||||||||||    
T  40824445 catccaacagtggtcaaggtggaattcaacaattgttggctgcagaacaagaagcacaacatattgtgaatgctgcgaaaaatggtatt 40824357  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 580 - 647
Target Start/End: Original strand, 22283564 - 22283630
Alignment:
Q  580 ttgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaactt 647  Q
    ||||||||||||||||||||||  ||||  |||||||||| | |||||||||||| ||||||||||||    
T  22283564 ttgtttggattgacttatttgaacttatctactgtcataaat-tttgtgagactgtttaggagaactt 22283630  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 675
Target Start/End: Original strand, 28520979 - 28521025
Alignment:
Q  629 agactgcttaggagaacttccggaaacaacttatgatatgtttataa 675  Q
    |||||||||||||||||||  ||||||||||||||| |||| |||||    
T  28520979 agactgcttaggagaacttatggaaacaacttatgacatgtctataa 28521025  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 647
Target Start/End: Original strand, 11782959 - 11783027
Alignment:
Q  578 gtttgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaactt 647  Q
    |||||||||||||||||||||||| |||||  ||||   ||||| || ||||||||| ||||||||||||    
T  11782959 gtttgtttggattgacttatttgagattatctactgatgtaagt-ttagtgagactgattaggagaactt 11783027  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 670
Target Start/End: Complemental strand, 30535714 - 30535625
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgtt 670  Q
    |||||| ||||||||||||||  | ||| |||| |||||  | ||| ||||||| || |||||||||  | |||||||||||||||||||    
T  30535714 tgtttgaattgacttatttgagttaatttactgacataaacacttgagagactgttttggagaacttatgaaaacaacttatgatatgtt 30535625  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 32171615 - 32171533
Alignment:
Q  584 ttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgata 666  Q
    ||||||||  ||||||||  ||||| |||| |||||| ||||||||||||| || ||||| |||  |||||||||||||||||    
T  32171615 ttggattggtttatttgaacttatttactgacataagcatttgtgagactggttgggagagcttaaggaaacaacttatgata 32171533  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 670
Target Start/End: Original strand, 26559160 - 26559247
Alignment:
Q  583 tttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgtt 670  Q
    |||||||| ||||||||||  |||   |||| |||||| ||||||||||||| || | |||||||  | |||||||||||||||||||    
T  26559160 tttggattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatgaaaacaacttatgatatgtt 26559247  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 675
Target Start/End: Original strand, 281767 - 281861
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgtttataa 675  Q
    |||||||||||||||| |||| |||||  | || |||||||| ||||||||||| || ||||| ||   |||| |||||||||| |||| |||||    
T  281767 tgtttggattgacttacttgagattatgtagtgacataagtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataa 281861  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 634
Target Start/End: Complemental strand, 29249544 - 29249491
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactg 634  Q
    |||||||||||||||||||||  ||||| ||||| ||||||| |||| ||||||    
T  29249544 tgtttggattgacttatttgagcttatttactgttataagtacttgtaagactg 29249491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 581 - 669
Target Start/End: Original strand, 2460070 - 2460158
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgt 669  Q
    |||||||||| ||||||||||  ||||  |||  |||||||| ||||||||||| ||  |||| |||  ||||||||||||||| ||||    
T  2460070 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgt 2460158  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 675
Target Start/End: Complemental strand, 7674757 - 7674705
Alignment:
Q  623 tttgtgagactgcttaggagaacttccggaaacaacttatgatatgtttataa 675  Q
    ||||||||||||||| | |||||||  ||||||||||||||| ||||||||||    
T  7674757 tttgtgagactgcttggaagaacttatggaaacaacttatgacatgtttataa 7674705  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 664
Target Start/End: Complemental strand, 41831003 - 41830920
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatga 664  Q
    |||||||||||||||||||||  || |  ||||||||||  || |||||||||| || ||||||||| |  |||||||||||||    
T  41831003 tgtttggattgacttatttgagtttgtgtactgtcataaacatctgtgagactgtttgggagaacttgcaaaaacaacttatga 41830920  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 626 - 667
Target Start/End: Original strand, 19460350 - 19460391
Alignment:
Q  626 gtgagactgcttaggagaacttccggaaacaacttatgatat 667  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  19460350 gtgagactgtttaggagaacttttggaaacaacttatgatat 19460391  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 664
Target Start/End: Complemental strand, 54426194 - 54426112
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatga 664  Q
    ||||||||||| |||||||||  ||||  |||| ||||||| ||||||||||||||| |||||||||  | ||||| |||||||    
T  54426194 tgtttggattggcttatttgagcttatctactggcataagt-tttgtgagactgcttgggagaacttaggaaaacagcttatga 54426112  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 581 - 669
Target Start/End: Original strand, 27123271 - 27123359
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgt 669  Q
    |||||||||| ||||||||||  ||||  |||  |||||||| ||||||||||| ||  |||| |||  ||||||||||||||| ||||    
T  27123271 tgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgt 27123359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 664
Target Start/End: Complemental strand, 9996889 - 9996806
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatga 664  Q
    ||||||| |||||||||||||  ||||  |||  |||||||| |||||||||||||| ||||| |||   ||||||||||||||    
T  9996889 tgtttggcttgacttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagcttatagaaacaacttatga 9996806  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 664
Target Start/End: Complemental strand, 22878249 - 22878166
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatga 664  Q
    |||||||||||||||||||||  ||||  |||| |||||| | ||||||||||| || ||||| |||  |||||||| ||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaacaaattatga 22878166  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 634
Target Start/End: Original strand, 15370242 - 15370295
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactg 634  Q
    |||||||||||||||||||||  ||||  |||| |||||| |||||||||||||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataagcatttgtgagactg 15370295  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 631
Target Start/End: Original strand, 16785280 - 16785329
Alignment:
Q  582 gtttggattgacttatttgatattattgactgtcataagtatttgtgaga 631  Q
    ||||||||||||||| ||||  ||||| ||||||||||| ||||||||||    
T  16785280 gtttggattgacttagttgagcttatttactgtcataagcatttgtgaga 16785329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 581 - 661
Target Start/End: Complemental strand, 18179100 - 18179021
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaactta 661  Q
    |||||||||||||||||||||  ||||  |||  ||||||| |||||||||| ||| | |||||||| || ||||||||||    
T  18179100 tgtttggattgacttatttgagcttatctactaacataagt-tttgtgagaccgctcaagagaacttacgaaaacaactta 18179021  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 634
Target Start/End: Original strand, 14926900 - 14926954
Alignment:
Q  580 ttgtttggattgacttatttgatattattgactgtcataagtatttgtgagactg 634  Q
    ||||||||||||||||||||||  ||||| |||| |||||| | |||||||||||    
T  14926900 ttgtttggattgacttatttgaacttatttactggcataagcacttgtgagactg 14926954  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 669
Target Start/End: Original strand, 39551130 - 39551216
Alignment:
Q  583 tttggattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgt 669  Q
    ||||||||||||||||||| |||||  || |  ||||| |||||||| |||| || |||||| ||  ||||||||||||||| ||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttgtgaaactgtttgggagaatttatggaaacaacttatgacatgt 39551216  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 634
Target Start/End: Original strand, 43368619 - 43368672
Alignment:
Q  581 tgtttggattgacttatttgatattattgactgtcataagtatttgtgagactg 634  Q
    |||||||||||||||||||||| ||||  |||  |||||| |||||||||||||    
T  43368619 tgtttggattgacttatttgatcttatctactaacataagcatttgtgagactg 43368672  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 689
Target Start/End: Complemental strand, 26542681 - 26542580
Alignment:
Q  587 gattgacttatttgatattattgactgtcataagtatttgtgagactgcttaggagaacttccggaaacaacttatgatatgtttataaaatgttgtcaa 686  Q
    |||||||||||||||| ||||  |||  |||||||| |||| |||||| || | ||| ||| | ||||||||||||||||||| |||||  |||| ||||    
T  26542681 gattgacttatttgat-ttatctactcacataagtacttgtaagactgtttggaagagcttactgaaacaacttatgatatgtctataacttgttttcaa 26542583  T
Q  687 ctt 689  Q
    |||    
T  26542582 ctt 26542580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 641 - 681
Target Start/End: Original strand, 26808174 - 26808214
Alignment:
Q  641 agaacttccggaaacaacttatgatatgtttataaaatgtt 681  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  26808174 agaacttacggaaacaacttatgacatgtttataaactgtt 26808214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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