View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9315_low_3 (Length: 523)
Name: NF9315_low_3
Description: NF9315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9315_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 9e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 116 - 329
Target Start/End: Original strand, 10299042 - 10299255
Alignment:
| Q |
116 |
atgtgcaaatcattcccttctccctggaaatggattctctcatatgtatttgatatataagttgagtgagtaaagtgtgatatatcaccatttaaannnn |
215 |
Q |
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| T |
10299042 |
atgtgcaaatcattcccttctccctggaaatggattctctcatatgtatttgatatataagttgagtgagtaaagtgtgatttatcaccatttaaatttt |
10299141 |
T |
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| Q |
216 |
nnnnatctaaatatttcatgtgttttttcttttcatgaacgatgatacatcatactttgcactctgatgtataaattacatattagaggattcaatccac |
315 |
Q |
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| T |
10299142 |
ttttatctaaatatttcatgtgttttttcttttcatgaacgatgatacatcatactttgcactctgatgtataaattacatattagaggattcattccac |
10299241 |
T |
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| Q |
316 |
ccttctcccacaac |
329 |
Q |
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| T |
10299242 |
ccttctccaacaac |
10299255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 10299343 - 10299430
Alignment:
| Q |
417 |
cgttgagttgcggtgagagttgatattttagccctgtttttattgttgttgttttgtttcaacgtttgctctttaagcatgcagtgat |
504 |
Q |
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| T |
10299343 |
cgttgagttgcggtgagaattgatattttagccctgtttttattgttgttgttttgtttcaacgtttgctctttaagcatgtagtgat |
10299430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10298934 - 10298982
Alignment:
| Q |
1 |
actgcgtctaacatggaccaccaatccaccgtaacctagttggtcgagt |
49 |
Q |
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| T |
10298934 |
actgcgtctaacatggaccaccaatccaccgtaacctagttggtcgagt |
10298982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 10299013 - 10299043
Alignment:
| Q |
70 |
ggctttctcctttccactcaaactcatccat |
100 |
Q |
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| T |
10299013 |
ggctttctcctttccactcaaactcatccat |
10299043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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