View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9315_low_4 (Length: 465)
Name: NF9315_low_4
Description: NF9315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9315_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 38069624 - 38069189
Alignment:
| Q |
16 |
agcacacaaactcagatgtacaacaccaaagtcacacacaaca--------gtacttcacaactgctctgttgtgctctttccacattcttctctgattc |
107 |
Q |
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| T |
38069624 |
agcacacaaactcagatgtacaacaccaaagtcacacacaacacaacaacagtacttcacaactgttctgttgtgctctttccacattcttctctgattc |
38069525 |
T |
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| Q |
108 |
attcacactcacgctagtagagcttaacaatggatccagttagcgaatggggaaacacaccgttagtaaccgtggacccagaaatccacgacttaatcga |
207 |
Q |
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| T |
38069524 |
attcacact------agtagagcttaacaatggatccagttagtgaatggggaaacacaccattagtaaccgtggacccagaaatccacgacttaatcga |
38069431 |
T |
|
| Q |
208 |
aaaagaaaagcgccgtcaatgccgcggaatcgaactcatagcctcagaaaatttcacctccttcgcagtcattgaagccctaggaagcgccctcaccaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38069430 |
aaaagaaaagcgccgtcaatgccgcggaatcgaactcatagcctcagaaaatttcacctccttcgcagtcattgaagccctaggaagcgccctcaccaac |
38069331 |
T |
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| Q |
308 |
aaatactccgagggcatgcccggtaaccgttactacggcggtaatgaattcatcgaccagatcgaaaacatttgccgctcacgcgctctcaccgccttcc |
407 |
Q |
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| T |
38069330 |
aaatactccgagggcatgcccggtaaccgttactacggcggcaacgaattcatcgaccagatcgaaaacatttgccgctcacgcgctctcaccgccttcc |
38069231 |
T |
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| Q |
408 |
acctcgacgccgccacctggggcgtcaacgttcaaccttact |
449 |
Q |
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| T |
38069230 |
acctcgacgccgccacctggggcgtcaacgttcaaccttact |
38069189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 137 - 396
Target Start/End: Original strand, 35167190 - 35167449
Alignment:
| Q |
137 |
atggatccagttagcgaatggggaaacacaccgttagtaaccgtggacccagaaatccacgacttaatcgaaaaagaaaagcgccgtcaatgccgcggaa |
236 |
Q |
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|||||||| ||||| |||||||| |||||||| | |||||||| |||||||| ||||||||| |||||||||||||||| || || ||||||||||||| |
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| T |
35167190 |
atggatcccgttagtgaatggggtaacacaccactcgtaaccgtcgacccagagatccacgacctaatcgaaaaagaaaaacgtcgccaatgccgcggaa |
35167289 |
T |
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| Q |
237 |
tcgaactcatagcctcagaaaatttcacctccttcgcagtcattgaagccctaggaagcgccctcaccaacaaatactccgagggcatgcccggtaaccg |
336 |
Q |
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|||||||||| || || |||||||||||||||||||| ||||| ||||| || || ||||| | ||||||||||||||||| |||||||| |||||||| |
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| T |
35167290 |
tcgaactcatcgcatccgaaaatttcacctccttcgccgtcatcgaagctctcggcagcgctttaaccaacaaatactccgaaggcatgccgggtaaccg |
35167389 |
T |
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| Q |
337 |
ttactacggcggtaatgaattcatcgaccagatcgaaaacatttgccgctcacgcgctct |
396 |
Q |
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||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||| |
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| T |
35167390 |
ttactacggcggtaacgaattcatcgaccaaatcgaaaacctttgccgttcacgcgctct |
35167449 |
T |
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