View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9315_low_5 (Length: 365)
Name: NF9315_low_5
Description: NF9315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9315_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 26216651 - 26216303
Alignment:
| Q |
1 |
ctaaaagtttgcaatatctatgatagaaagcatactacaacctcttccattagggactttatcatcattaaaaagttcaacatcgacatacatcttccta |
100 |
Q |
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| T |
26216651 |
ctaaaagtttgcaatatctatgatagaaagcatactacaacttcttccattagggactttatcatcattaaaaagttcaacatcgacatacatcttccta |
26216552 |
T |
|
| Q |
101 |
aggcccctctcattaaagaggttctctggcatcgacctatagttggttggatctagtgcaacactgatgttgcagccaccaatgtatcattatcctgtgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26216551 |
aggcccctctcattaaagaggttctctggcatcgacctatagttggttggatcgagtgcaacactgatgttgcagccaccaatgtatcattatcctgtgg |
26216452 |
T |
|
| Q |
201 |
aggcatatttactgatagcaatgctcatctttgataataatcttgctcagggatcagcttgcatggcagagctatctatctggtgtgatgagagcaatgg |
300 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26216451 |
aggcatctttcctgatagcaatgctcatctttgataataatcttgctcagggatcagcttgcatggcagagctatctatctggtgtgatgagagcaattg |
26216352 |
T |
|
| Q |
301 |
agatggatcgtcaaaataattggccaaacctttggttggagaatgatta |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26216351 |
agatggatcgtcaaaataattggccaaacctttggttggagaatgatta |
26216303 |
T |
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