View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9316_high_4 (Length: 427)
Name: NF9316_high_4
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 2701043 - 2701447
Alignment:
| Q |
19 |
agagttttgttgtttgctacttcttagtttaccaagactatggacaatgcttatctcttattcagaaataataataataatctttagtgcacttcgtttt |
118 |
Q |
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| T |
2701043 |
agagttttgttgtttgctacttcttagtttaccaagactatggacaatgtttatctcttattcagaaataataataataatctttagtgcacttcgtttt |
2701142 |
T |
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| Q |
119 |
tctttttatagattgactcttttgatgagataagttagtttatgttggatagata----taagtatggatagtgatcgaaacatagtcacataattcaca |
214 |
Q |
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| T |
2701143 |
tctttttatagattggctcttttgatgagataagttagtttatgttggataggtataagtaagtatggatggtgatcgaaacatagtcacataattcgca |
2701242 |
T |
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| Q |
215 |
atacgcgttactatggatatggatt-----cacacgagttgagaaaaaatcaatatgttatatagttttggtactaattggttcgtactaattaaatata |
309 |
Q |
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| T |
2701243 |
atacacgttactatggatatggatttgcggtacacgatttgagataaaattaatatgttatatagttttggtactagttggttcgtactaattaaatata |
2701342 |
T |
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| Q |
310 |
gcaacctatcagcaagctattacctcnnnnnnnnnntatagtaagctaccagtaaattttaggaaatcgattcttttt-actagcattttaaacaaaaaa |
408 |
Q |
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| T |
2701343 |
gtaagctatcagcaagctattacctc-aaaaaaaaatatagtaagctatcagtaagttttaagaaatcgattctttttaactagcatttt-aacaaaaaa |
2701440 |
T |
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| Q |
409 |
ggtagaa |
415 |
Q |
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| T |
2701441 |
ggtagaa |
2701447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 2701643 - 2701706
Alignment:
| Q |
346 |
tatagtaagctaccagtaaatttt-aggaaatcgattctttttactagcattttaaacaaaaaa |
408 |
Q |
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| T |
2701643 |
tatagtaagctatcattaaatttttaagaaatcgattatttttactagcattttaaataaaaaa |
2701706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 2701549 - 2701583
Alignment:
| Q |
386 |
ttactagcattttaaacaaaaaaggtagaataatc |
420 |
Q |
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| T |
2701549 |
ttactagcattttaaacaaaaaaggtagaagaatc |
2701583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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