View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9316_high_5 (Length: 389)

Name: NF9316_high_5
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9316_high_5
NF9316_high_5
[»] chr7 (1 HSPs)
chr7 (17-381)||(48892541-48892899)
[»] chr8 (6 HSPs)
chr8 (19-169)||(9621926-9622076)
chr8 (97-152)||(5843121-5843176)
chr8 (106-152)||(5849872-5849918)
chr8 (106-152)||(5921241-5921287)
chr8 (106-152)||(5984661-5984707)
chr8 (91-149)||(7195365-7195423)
[»] chr4 (5 HSPs)
chr4 (61-152)||(52071704-52071795)
chr4 (79-152)||(50200928-50201001)
chr4 (90-152)||(30007246-30007308)
chr4 (88-162)||(31939598-31939672)
chr4 (88-162)||(31999896-31999970)
[»] chr1 (3 HSPs)
chr1 (88-149)||(33732203-33732264)
chr1 (88-152)||(16138907-16138971)
chr1 (91-147)||(45605862-45605918)
[»] chr3 (1 HSPs)
chr3 (61-152)||(44674039-44674130)
[»] chr6 (1 HSPs)
chr6 (88-162)||(3910640-3910714)
[»] chr2 (2 HSPs)
chr2 (84-149)||(13342987-13343052)
chr2 (91-152)||(27172787-27172848)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 48892541 - 48892899
Alignment:
Q  17 caataagggaccatctattaccaataagtgaatgcattctgataataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48892541 caataagggaccatctattaccaataagtgaatgcattctgataataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagata 48892640  T
Q  117 gttcatccatcttagtctgcaactttttccacatctaagaagccctgcatcaaccaccaacccattttttcacgtaaggttgctaagtctt--acaggag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  48892641 gttcatccatcttagtctgcaactttttccacatctaagaagccctgcatcaaccaccaacccattttttcacgtaaggttgctaagtcttacacaggag 48892740  T
Q  215 ataaattaaggatctaggttcaaacattagtgacacagaaaatatcaaccaactactactagtatatatactaatatttgttttgtccaaaaaatgtgat 314  Q
    |||    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||    
T  48892741 ata----aaggaactaggttcaaacattagtgacacagaaaatatcaacaaactactactag----tatactaatatttgttttgtccaaaaaatgtgat 48892832  T
Q  315 gtaggatacgacacaaacacaccgacaccaataataaattgagaaaacgacgttattcagtataatc 381  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  48892833 gtaggatacgacacaaacacactgacaccaataataaattgagaaaacgacgtaattcagtataatc 48892899  T

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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 9622076 - 9621926
Alignment:
Q  19 ataagggaccatctattaccaataagtgaatgcattctgataataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagt 118  Q
    ||||| ||||||||||| |||| ||||||||| | ||| || || ||||||||||||||| |||||||||| |||||||||||||||||||| ||||| |    
T  9622076 ataagtgaccatctatttccaagaagtgaatgtaatcttattatgagatcatcttcttcttgagttatgttacctctctttatatctggtctaagataat 9621977  T
Q  119 tcatccatcttagtctgcaactttttccacatctaagaagccctgcatcaa 169  Q
    |||||||||| ||||| |||||||| |||||||||||||| ||||||||||    
T  9621976 tcatccatctaagtctacaacttttcccacatctaagaagtcctgcatcaa 9621926  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 5843121 - 5843176
Alignment:
Q  97 tttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    |||| ||| ||||||||||| || |||||||||| ||| |||||||||||||||||    
T  5843121 tttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatct 5843176  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 5849872 - 5849918
Alignment:
Q  106 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    ||||||||||| || |||||||||| ||| |||||||||||||||||    
T  5849872 ggtcttagataatttatccatcttaatctacaactttttccacatct 5849918  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 5921241 - 5921287
Alignment:
Q  106 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  5921241 ggtcttagataatttatccatcttaatctgcaactctttccacatct 5921287  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 5984661 - 5984707
Alignment:
Q  106 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  5984661 ggtcttagataatttatccatcttaatctgcaactctttccacatct 5984707  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 7195423 - 7195365
Alignment:
Q  91 cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca 149  Q
    |||||||||||| ||||| | ||||| |||| ||||||| |||| ||||||||||||||    
T  7195423 cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca 7195365  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 52071704 - 52071795
Alignment:
Q  61 ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    |||||||| ||||| ||||  | |||||| |||||||| ||||||||||||||||| |||| |||||| ||||| |||||||||||||||||    
T  52071704 ataagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatct 52071795  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 50200928 - 50201001
Alignment:
Q  79 ggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    ||||||||||| |||||||| | ||||| |||||  ||||| |||||||| ||||||||||| |||||||||||    
T  50200928 ggagttatgttacctctcttcacatctgatcttaagtagtttatccatctgagtctgcaactctttccacatct 50201001  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 30007308 - 30007246
Alignment:
Q  90 tcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    |||||| || ||||| ||||||| ||||||  |||| ||||||||||||||||| ||||||||    
T  30007308 tcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatct 30007246  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 31939672 - 31939598
Alignment:
Q  88 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaagccct 162  Q
    |||||||| ||||| |||||||  || |||||  |||||||||||||||| || |||||||||||  ||||||||    
T  31939672 tttcctctttttatgtctggtcggaggtagttagtccatcttagtctgcagctctttccacatcttggaagccct 31939598  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 31999970 - 31999896
Alignment:
Q  88 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaagccct 162  Q
    |||||||| ||||| |||||||  || |||||  |||||||||||||||| || |||||||||||  ||||||||    
T  31999970 tttcctctttttatgtctggtcgaaggtagttagtccatcttagtctgcagctctttccacatctttgaagccct 31999896  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 33732203 - 33732264
Alignment:
Q  88 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca 149  Q
    ||||||||||| ||||||||||| | |||||| ||||| || |||||||| |||||||||||    
T  33732203 tttcctctcttaatatctggtctcaaatagttaatccacctaagtctgcagctttttccaca 33732264  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 16138907 - 16138971
Alignment:
Q  88 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    ||||||||||| ||||| ||| ||| |||||| |||||||| | ||| ||||| |||||||||||    
T  16138907 tttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatct 16138971  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 45605862 - 45605918
Alignment:
Q  91 cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttcca 147  Q
    ||||||||||   |||| ||||||||||| ||||| ||||||||||| |||||||||    
T  45605862 cctctctttaatcctggccttagatagttaatccaccttagtctgcagctttttcca 45605918  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 44674130 - 44674039
Alignment:
Q  61 ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    |||||||||||||||| |  ||| | |||||||||||| | ||| |||||||| || || |||||||| | ||||||||| || ||||||||    
T  44674130 ataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 3910714 - 3910640
Alignment:
Q  88 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatctaagaagccct 162  Q
    ||||||||||| |||||||| || ||||||||  ||||||||| |||||| || || ||||||||  ||||||||    
T  3910714 tttcctctcttaatatctggcctaagatagttagtccatcttaatctgcagctcttaccacatctttgaagccct 3910640  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 13343052 - 13342987
Alignment:
Q  84 tatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca 149  Q
    ||||||||||||||| | ||||| ||| | |||||| |||||||||||||| ||||| || |||||    
T  13343052 tatgtttcctctcttcacatctgctctcaaatagttgatccatcttagtctacaactcttcccaca 13342987  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 27172787 - 27172848
Alignment:
Q  91 cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 152  Q
    ||||| |||| ||||||||| | ||||||  ||||||||| ||||||||| |||||||||||    
T  27172787 cctctttttagatctggtctcaaatagtttgtccatcttaatctgcaactctttccacatct 27172848  T

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