View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9316_low_1 (Length: 974)
Name: NF9316_low_1
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_1 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 877; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 22 - 970
Target Start/End: Original strand, 24907076 - 24908020
Alignment:
| Q |
22 |
aagggcaaggttaaacgtcccatttataatctagagtcgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatgga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907076 |
aagggcaaggttaaacgtcccatttataatctagagttgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatgga |
24907175 |
T |
|
| Q |
122 |
ttttgtactggagggattggatgattatggatttggtggatcacattgccacccttctgtaacgttactttcattttatacctcggttggttatttgaat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907176 |
ttttgtactggagggattggatgattatggatttggtggatcacattgccacccttatgtaacgttactttcattttatacctcggttggttatttgaat |
24907275 |
T |
|
| Q |
222 |
ttccacattttccttgagctcattgttattacgtattt--gatatcttccttgataagtaataatttattataatttgttactgcatcttttagtatgtc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24907276 |
ttccacattttccttgagctcattgttattacgtctttttgatatcttccttgataagtaataatttattataatgtgttactgcatcttttagtatgtc |
24907375 |
T |
|
| Q |
320 |
tcgaatggcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaa |
419 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907376 |
tcgaatggcgttgtaattttcaaaacagttgcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaa |
24907475 |
T |
|
| Q |
420 |
acgtgggtttagctttcccgccgccaaaccaaacaggtcctttaactgttagctctttgaaacatgggtttggctctttgaaacgtgttattgctgatca |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907476 |
acgtgggtttagctttcccgccgccaaaccaaacaggtcctttcactgttagctctttgaaacatgggtttggctctttgaaacgtgttattgctgatca |
24907575 |
T |
|
| Q |
520 |
atgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaaataagattcatca |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24907576 |
atgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaatataagaaataagattcatca |
24907675 |
T |
|
| Q |
620 |
taatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaatgataaatacatcatataccagaaacatggaaccaacatcatttgt |
719 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907676 |
taatgaat------catgattccctttggaaccacatgtatcctaataactaaacgataaatacatcatataccagaaacatggaaccaacatcatttgt |
24907769 |
T |
|
| Q |
720 |
aaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtgcttgatt |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907770 |
aaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtgcttgatt |
24907869 |
T |
|
| Q |
820 |
acttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctcattaagat |
919 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907870 |
acttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctcattaagat |
24907969 |
T |
|
| Q |
920 |
gaacttgtctggaaagcatttgtagaacttgtttcatggttggtctgtgct |
970 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907970 |
gaacttgtctggaaagcatttgtagaacttgtttcatggttggtctgtgct |
24908020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 514 - 956
Target Start/End: Original strand, 24889863 - 24890303
Alignment:
| Q |
514 |
tgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaaataagat |
613 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||| |
|
|
| T |
24889863 |
tgatcaatttttgtatggaaagtggaaccaataagcaataacagaagtaaatatatgaacatttattcaatgtagtaccccacaacataagaaataagat |
24889962 |
T |
|
| Q |
614 |
tcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaat-gataaatacatcatataccagaaacatggaaccaacat |
712 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| || ||| | ||||||| |
|
|
| T |
24889963 |
tcatcataatatattta-cccattattccctttggaaccacatgtatcctaacaacaaaaaagataaatacatcacataccaaaagtatgaacccaacat |
24890061 |
T |
|
| Q |
713 |
catttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtg |
812 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24890062 |
catttgcaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgatgtcgattttcatattttttgtg |
24890161 |
T |
|
| Q |
813 |
cttgattacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctca |
912 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
24890162 |
cttgattacttgagatgacgatgacatctcattcaaagaaccactcgtctttgcggaggcattctatttgtatattccatgctcagtcaatgccttctcc |
24890261 |
T |
|
| Q |
913 |
ttaagatgaacttgtctggaaagcatttgtagaacttgtttcat |
956 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
24890262 |
ata--atgaacttgtttggaaagcatttgtagaacatgtttcat |
24890303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 313 - 455
Target Start/End: Complemental strand, 2212799 - 2212658
Alignment:
| Q |
313 |
gtatgtctcgaatggcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgct |
412 |
Q |
| |
|
|||||| | ||||||| ||||| ||||||||| || ||||||||||| ||| |||||||||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
2212799 |
gtatgtttagaatggcgttgta-ttttcaaaattgtggcaagaaatcatgttgccgtgaaagctaggaaagctagcttctcaatttccacgaaagttgcc |
2212701 |
T |
|
| Q |
413 |
ctttgaaacgtgggtttagctttcccgccgccaaaccaaacag |
455 |
Q |
| |
|
||| || |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
2212700 |
cttcgagacgtgggtttggctttcccaccgccaaaccaaacag |
2212658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 18264575 - 18264650
Alignment:
| Q |
97 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgcca |
172 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| |||||||||| ||||||| | ||||||| ||||||| |
|
|
| T |
18264575 |
ttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgcca |
18264650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 23869296 - 23869369
Alignment:
| Q |
92 |
aaaaattgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcac |
165 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||| |||| || ||||||| |||||||| ||||||||| |
|
|
| T |
23869296 |
aaaaattgtttggtggatggatctgatagattttgtagtggattaatcggatgataatggatttagtggatcac |
23869369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 2e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 31302439 - 31302245
Alignment:
| Q |
22 |
aagggcaaggttaaacgtcccatttataatctagagtcgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatgga |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
31302439 |
aagggcaaggtgaaacgtcccatttataatctagagtcgcatgtaacgacatttctaata--agaag--gaaaaattgtttggtagatgaattagatgga |
31302344 |
T |
|
| Q |
122 |
ttttgtactggagggattggatgattatggatttggtggatcacattgccacccttctgtaacgttactttcattttatacctcggttggttatttgaa |
220 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
31302343 |
ttttgtactcgagggattggatggatatggatttggtggatcacattgccacccttatgtaacgttactttaattttatacctcagttggttatttgaa |
31302245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 350 - 457
Target Start/End: Original strand, 35154572 - 35154681
Alignment:
| Q |
350 |
gcaagaaatcacattgtcgtgaaagctaggaaagc--aagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaa |
447 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| |||| | || |||| |||||| |||||||||||||||| |||| ||||| || |||||| |
|
|
| T |
35154572 |
gcaagaaatcatgttgccgtgaaagctaggaaagcaaaagcatctccatttccacgaaatttgctctttgaaacgtatgtttggcttttccattgccaaa |
35154671 |
T |
|
| Q |
448 |
ccaaacaggt |
457 |
Q |
| |
|
|||||||||| |
|
|
| T |
35154672 |
ccaaacaggt |
35154681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 25245051 - 25244983
Alignment:
| Q |
107 |
gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
25245051 |
gatggatttgatggattttgtagtggatggattggatggatatggatctcatggatcatattgccaccc |
25244983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 25275167 - 25275089
Alignment:
| Q |
97 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| |||||||||| |||| || | ||||||| |||||||||| |
|
|
| T |
25275167 |
ttgtttgatggatggattggatggattttgtagtggatggattggatggatatgaatctcatggatcatattgccaccc |
25275089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 8e-33; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 336 - 456
Target Start/End: Original strand, 11026769 - 11026889
Alignment:
| Q |
336 |
ttttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagcttt |
435 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
11026769 |
ttttcaaaactgcggcaagaaatcacgttgtcgtgaaagctaggaaagaaagcttctcaatttccacgaaagtcgctctttgaaacgtgggtttggcttt |
11026868 |
T |
|
| Q |
436 |
cccgccgccaaaccaaacagg |
456 |
Q |
| |
|
||| | ||||||||||||||| |
|
|
| T |
11026869 |
cccactgccaaaccaaacagg |
11026889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 304 - 457
Target Start/End: Complemental strand, 24403809 - 24403656
Alignment:
| Q |
304 |
catcttttagtatgtctcgaatggcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacg |
403 |
Q |
| |
|
||||||| |||||| | ||||| |||| || |||||||||| | |||| ||||||| |||||||||||| |||||||||||| | | |||| || | |
|
|
| T |
24403809 |
catctttacgtatgtttggaatgacattatatttttcaaaactgcggcaaaaaatcacgttgtcgtgaaagttaggaaagcaagttacttcatttctagg |
24403710 |
T |
|
| Q |
404 |
aaagttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaacaggt |
457 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
24403709 |
aaagttgctctttgaaatgtgggtttggctttcccaccgtcaaaccaaacaggt |
24403656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 8933907 - 8933983
Alignment:
| Q |
97 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccac |
173 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| ||||||||||| ||||||| | ||||||| |||||||| |
|
|
| T |
8933907 |
ttgtttgatggatggattggatggattttgtagtggatggattggatgaatatggatctcatggatcatattgccac |
8933983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 5708198 - 5708120
Alignment:
| Q |
97 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| ||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
5708198 |
ttgtttgatggatggattggatggattttgtagtggatagattggatggatatggatctcatggatcatattgccaccc |
5708120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 9272896 - 9272953
Alignment:
| Q |
107 |
gatggattagatggattttgtactggagggattggatgattatggatttggtggatca |
164 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||| ||||||| || ||||||| |
|
|
| T |
9272896 |
gatggattggatggattttgtagtggatggattggatggatatggatctgatggatca |
9272953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 350 - 454
Target Start/End: Original strand, 40350454 - 40350558
Alignment:
| Q |
350 |
gcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaacc |
449 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||| ||||| || |||| || |||| |||||||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
40350454 |
gcaaaaaatcacgttgtcgtgaaagttaggaaagcgagcttctccatttctatgaaaattgctctttgaaacgtgggtttggctttcccactgccaaacc |
40350553 |
T |
|
| Q |
450 |
aaaca |
454 |
Q |
| |
|
||||| |
|
|
| T |
40350554 |
aaaca |
40350558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 322 - 458
Target Start/End: Original strand, 6217640 - 6217776
Alignment:
| Q |
322 |
gaatggcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaac |
421 |
Q |
| |
|
|||| |||||||| |||||||||| | |||||||| ||| || |||||||||||||||| |||||| | ||||| |||||||||||||||| | || |
|
|
| T |
6217640 |
gaatagcattgtatttttcaaaactgcggcaagaaaccacgttaccgtgaaagctaggaaactaagcttcttcattttcacgaaagttgctctttaagac |
6217739 |
T |
|
| Q |
422 |
gtgggtttagctttcccgccgccaaaccaaacaggtc |
458 |
Q |
| |
|
| |||| ||||| || ||||||||||||| ||||| |
|
|
| T |
6217740 |
gatagtttggcttttccaccgccaaaccaaagaggtc |
6217776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 41189669 - 41189587
Alignment:
| Q |
92 |
aaaaattgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccacc |
174 |
Q |
| |
|
|||| ||||||| | |||||||| ||||||||||||| |||| |||||||||| ||||||| | ||||||| ||||||||| |
|
|
| T |
41189669 |
aaaatttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgccacc |
41189587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 14988302 - 14988387
Alignment:
| Q |
371 |
aaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgcc-aaaccaaacag |
455 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||| |||| ||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
14988302 |
aaagctaggaaagtaagcttttagattttcacgaaagtagctccttgaaacgtgggtttggctttcccaccgccaaaaccaaacag |
14988387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 9129510 - 9129568
Alignment:
| Q |
117 |
atggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9129510 |
atggattttgtagcggatggaatggatgaatatggatttggtggatcactttgccaccc |
9129568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 9137617 - 9137675
Alignment:
| Q |
117 |
atggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9137617 |
atggattttgtagcggatggaatggatgaatatggatttggtggatcactttgccaccc |
9137675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 34365493 - 34365439
Alignment:
| Q |
121 |
attttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
|||||||| || | |||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
34365493 |
attttgtagtgaatggattggatggttatagatttggtggatcaaattgccaccc |
34365439 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 26858044 - 26857966
Alignment:
| Q |
97 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |||| ||||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
26858044 |
ttgtttgatagatggattggatggattttgtagtggatggattggatgaatatggatctcatggatcatattgccaccc |
26857966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 7561317 - 7561386
Alignment:
| Q |
385 |
aagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaaca |
454 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||| | ||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
7561317 |
aagcttttctattttcacgaaagtagctcttttagacgtgagtttagctttcccgcggtcaaaccaaaca |
7561386 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 12768670 - 12768583
Alignment:
| Q |
371 |
aaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaacaggtc |
458 |
Q |
| |
|
|||||||||||||||||||| || | || ||||||||||||| || || | | ||| |||||||||||||||||||||||||||| |
|
|
| T |
12768670 |
aaagctaggaaagcaagcttctctacttccacgaaagttgctccttaaaccacgagttcggctttcccgccgccaaaccaaacaggtc |
12768583 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 14385 - 14463
Alignment:
| Q |
97 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| |||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
14385 |
ttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgccaccc |
14463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 17894031 - 17893953
Alignment:
| Q |
97 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
|||||||||||||||||| ||||||| || | |||| |||||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
17894031 |
ttgtttggtagatggattggatggatattatggtggatggattggatgtatatggatttgatggatcctattgccaccc |
17893953 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 43323796 - 43323718
Alignment:
| Q |
97 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
175 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| |||||||||| ||| ||| | ||||||| |||||||||| |
|
|
| T |
43323796 |
ttgtttgatggatggattggatggattttgtagtggatggattggatggatatagatctcatggatcatattgccaccc |
43323718 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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