View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9316_low_11 (Length: 371)
Name: NF9316_low_11
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 98 - 356
Target Start/End: Original strand, 44161244 - 44161501
Alignment:
| Q |
98 |
gtgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttagtttttc |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44161244 |
gtgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttagtttttc |
44161343 |
T |
|
| Q |
198 |
ctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcgggtggagcagtttgaaagcatgacataaaatatagttttcacacat |
297 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44161344 |
ctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgc-ggtggagcagtttgaaagcatgacataaaatatagttttcacacat |
44161442 |
T |
|
| Q |
298 |
taaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44161443 |
taaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatt |
44161501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 99 - 356
Target Start/End: Original strand, 14178349 - 14178605
Alignment:
| Q |
99 |
tgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttagtttttcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14178349 |
tgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttagtttttcc |
14178448 |
T |
|
| Q |
199 |
tttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcgggtggagcagtttgaaagcatgacataaaatatagttttcacacatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14178449 |
tttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgc-ggtggagcagtttgaaagcatgacataaaatatagttttcacacatt |
14178547 |
T |
|
| Q |
299 |
aaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14178548 |
aaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagccgatt |
14178605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 99 - 356
Target Start/End: Original strand, 14173595 - 14173851
Alignment:
| Q |
99 |
tgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttagtttttcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14173595 |
tgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttagtttttcc |
14173694 |
T |
|
| Q |
199 |
tttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcgggtggagcagtttgaaagcatgacataaaatatagttttcacacatt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14173695 |
tttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgc-ggtggagcagtttgaaagcatgacataaaatatagttttcacacatt |
14173793 |
T |
|
| Q |
299 |
aaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatt |
356 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
14173794 |
aaggacatgactttggtgtgaaaggagggcatagcatttaactcttcatcagccgatt |
14173851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 97 - 356
Target Start/End: Original strand, 15289893 - 15290151
Alignment:
| Q |
97 |
tgtgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttagttttt |
196 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
15289893 |
tgtgttggtcccaccatgtgggacatgttccagccaaaaggaaaattgcaacaagcaattgtcaaagtcttctacacattaaatgcatggcttagttttt |
15289992 |
T |
|
| Q |
197 |
cctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcgggtggagcagtttgaaagcatgacataaaatatagttttcacaca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15289993 |
cctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgc-ggtggagcagtttgaaagcatgacataaaatatagttttcacaca |
15290091 |
T |
|
| Q |
297 |
ttaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatt |
356 |
Q |
| |
|
|| | ||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |
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|
| T |
15290092 |
ttgaagacatgactttggtgtgaaagaaatgcatagcatttaactcttcatcaactgatt |
15290151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 97 - 356
Target Start/End: Original strand, 15302600 - 15302858
Alignment:
| Q |
97 |
tgtgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaaatgcatggcttagttttt |
196 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
15302600 |
tgtgttggtcccaccatgtggggcatgttccagccaaaaggaaaatcgcaacaagcaattgtcaaagtcttctacacattaaatgcatggcttagatttt |
15302699 |
T |
|
| Q |
197 |
cctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcgggtggagcagtttgaaagcatgacataaaatatagttttcacaca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15302700 |
cctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgc-agtggagcagtttgaaagcatgacataaaatatagttttcacaca |
15302798 |
T |
|
| Q |
297 |
ttaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatt |
356 |
Q |
| |
|
|| | ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
15302799 |
ttgaagacatgactttcgtgtgaaaggagtccatagcatttaactcttcatcaactgatt |
15302858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24385152 - 24385055
Alignment:
| Q |
1 |
taagcacacaaagacttgtttcattcaacaacacttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24385152 |
taagcacacaaagacttgtttcattcaacaacacttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatg |
24385055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 24391345 - 24391268
Alignment:
| Q |
21 |
tcattcaacaacacttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatg |
98 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||||||||| ||||| ||||||||| |||||||||| |
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|
| T |
24391345 |
tcattcaacaacacttcacgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagatg |
24391268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 37041128 - 37041079
Alignment:
| Q |
106 |
cccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaatt |
156 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
37041128 |
cccaccacgtggggtatgttccagcc-aaaggaaaaatgcatgaagcaatt |
37041079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 1986113 - 1986161
Alignment:
| Q |
49 |
gagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagat |
97 |
Q |
| |
|
||||| ||||||| ||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
1986113 |
gagggagcaacaactgtgtatatctctctgtccccaaatcaagtgagat |
1986161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 42911978 - 42911787
Alignment:
| Q |
99 |
tgttggtcccaccacgtggggtatgttccagccaaaaggaaaattgcaacaagcaattgtcaaattcttctacacattaa------atgcatggcttagt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
42911978 |
tgttggtcccaccacgtggggtatgttccagctaaaaggaaaattgcaacaaacaattgtcaaagtcttctacacattaaccgtaaatgcatggcttagt |
42911879 |
T |
|
| Q |
193 |
ttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcgggtggagcagtttgaaagcatgacataaaatata |
285 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
42911878 |
ttttcttttcaaatagtttggctatgtataggatgtgcagagaacacacatagcttgc-gatggagcagtttgaaagcatgacataaaatata |
42911787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 175 - 356
Target Start/End: Complemental strand, 29107505 - 29107324
Alignment:
| Q |
175 |
ttaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcgggtggagcagtttgaaagcatga |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| ||||| |
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|
| T |
29107505 |
ttaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgttcagagaacacacatagcttg-tggtgaagcagtttgaaaacatga |
29107407 |
T |
|
| Q |
275 |
cataaaatatag-ttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatt |
356 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| ||||||| || |||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
29107406 |
cataaaatatagtttttcacacattgaggacataactttggcgtaaaaggagtgcatagcatttaactcatcatcaactgatt |
29107324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 42911513 - 42911453
Alignment:
| Q |
284 |
tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactctt |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911513 |
tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactctt |
42911453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 24950264 - 24950336
Alignment:
| Q |
26 |
caacaacacttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatg |
98 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||| ||||| ||||||||| | ||| |||||||||| |
|
|
| T |
24950264 |
caacaacccttcattagaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatg |
24950336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 6921493 - 6921556
Alignment:
| Q |
34 |
cttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagat |
97 |
Q |
| |
|
|||||||| ||| | ||||| ||||||||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
6921493 |
cttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagat |
6921556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 6943097 - 6943160
Alignment:
| Q |
34 |
cttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagat |
97 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||| ||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
6943097 |
cttcatcacaacattgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagat |
6943160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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