View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9316_low_13 (Length: 367)
Name: NF9316_low_13
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_13 |
 | |
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| [»] scaffold0001 (2 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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| [»] scaffold0247 (1 HSPs) |
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| [»] scaffold0193 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 195 - 349
Target Start/End: Complemental strand, 33904998 - 33904844
Alignment:
| Q |
195 |
tgtctatgtacaataaaggaaatttaaatatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtat |
294 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33904998 |
tgtctatggacaataaaggaaagttaaatatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtat |
33904899 |
T |
|
| Q |
295 |
acagaagtatggtgaaggaaaatggcatttagttccacaaagagcaggtataatg |
349 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33904898 |
acagaagtatggtgaaggaaaatggcatttagttccacaaagagcaggtataatg |
33904844 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 33905840 - 33905664
Alignment:
| Q |
7 |
tttggagttgtcgaattcacccatacacattaatgacactacttacttttcttaatatatttcctcaannnnnnnctttaagaatcttataagtagaaac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
33905840 |
tttggagttgtcgaattcacccatacacattaatgacactacttacttttcttaatatatttcctcaatttttttctttaagaatcttataaatagaaac |
33905741 |
T |
|
| Q |
107 |
atatggattattgtattcttcgtgtatcatt-cctttgtctttttacgcaacattaacacatgtatgcataaatata |
182 |
Q |
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| T |
33905740 |
atatggagtattgtattcttcgtgtatcattccctttgtctttttacgcaacattaacacatgtatgcataaatata |
33905664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 33867413 - 33867303
Alignment:
| Q |
236 |
agaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccacaaa |
335 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33867413 |
agaggtgtgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatgcagaagtatggtgaaggaaaatggcatttagttccacaaa |
33867314 |
T |
|
| Q |
336 |
gagcaggtata |
346 |
Q |
| |
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||||||||||| |
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| T |
33867313 |
gagcaggtata |
33867303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 33736559 - 33736435
Alignment:
| Q |
222 |
atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggca |
321 |
Q |
| |
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||||||||| ||| ||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33736559 |
atatggagaagactagaagtttgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtgaaggaaaatggca |
33736460 |
T |
|
| Q |
322 |
tttagttccacaaagagcaggtata |
346 |
Q |
| |
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||||||| | ||||||||||||||| |
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| T |
33736459 |
tttagtttctcaaagagcaggtata |
33736435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 330
Target Start/End: Complemental strand, 33699041 - 33698933
Alignment:
| Q |
222 |
atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggca |
321 |
Q |
| |
|
||||||||| | | ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||||| |
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| T |
33699041 |
atatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggca |
33698942 |
T |
|
| Q |
322 |
tttagttcc |
330 |
Q |
| |
|
||||||||| |
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|
| T |
33698941 |
tttagttcc |
33698933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 33763801 - 33763706
Alignment:
| Q |
250 |
aggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccacaaagagcaggtat |
345 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
33763801 |
aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcattttgttccacagagagcaggtat |
33763706 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 344
Target Start/End: Complemental strand, 33680507 - 33680385
Alignment:
| Q |
222 |
atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggca |
321 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||||||||||||||||| || || |||||||||| ||||| || || ||||||||||| |||||||| |
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| T |
33680507 |
atatggaaaagaccagaggtttgagaaaaggtgcatggacatatgaggaggacaatctactcaaggactgtattcaaaaatatggtgaagggaaatggca |
33680408 |
T |
|
| Q |
322 |
tttagttccacaaagagcaggta |
344 |
Q |
| |
|
||||||||| |||||||||||| |
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| T |
33680407 |
tttagttcctaaaagagcaggta |
33680385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 33823244 - 33823138
Alignment:
| Q |
243 |
tgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccacaaagagcagg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||| || || ||||||||||||||||||||||||||| |||| ||||| |||| |
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| T |
33823244 |
tgagaaaaggtgcatggacatatgaggaagacaacttactcaaggcttacattcacaagtatggtgaaggaaaatggcatttaattcccaaaagaacagg |
33823145 |
T |
|
| Q |
343 |
tataatg |
349 |
Q |
| |
|
||||||| |
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|
| T |
33823144 |
tataatg |
33823138 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 244 - 346
Target Start/End: Complemental strand, 33750277 - 33750175
Alignment:
| Q |
244 |
gagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccacaaagagcaggt |
343 |
Q |
| |
|
||||||| || | ||||||| ||||||||| ||| ||||||| |||| ||| | ||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
33750277 |
gagaaaacgtacgtggacatctgaggaagacaagttactcaaagcttatattaacaagtatggtgaaggaaaatggcatttaattcctaaaagagcaggt |
33750178 |
T |
|
| Q |
344 |
ata |
346 |
Q |
| |
|
||| |
|
|
| T |
33750177 |
ata |
33750175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 211 - 349
Target Start/End: Complemental strand, 149384 - 149246
Alignment:
| Q |
211 |
aggaaatttaaatatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaa |
310 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || | |||||||| ||| |
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| T |
149384 |
aggaaacttaaatatggatatgcccagaggcgtgagaaaaggtgcctggacatacgaggaagataagctactcaaggcttgcattgacaagtatggggaa |
149285 |
T |
|
| Q |
311 |
ggaaaatggcatttagttccacaaagagcaggtataatg |
349 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
149284 |
ggaaaatggcatttagttcctcaaagagcaggtaaaatg |
149246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 149485 - 149439
Alignment:
| Q |
138 |
cctttgtctttttacgcaacattaacacatgtatgcataaatatata |
184 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
149485 |
cctttctctttttacgcaaccttaacacatgtatgtataaatatata |
149439 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 5468519 - 5468629
Alignment:
| Q |
233 |
accagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccac |
332 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||||| || |||||||||||| || | ||||||||||||||||||||||||||| |||| | |
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|
| T |
5468519 |
accataggcgtgaaaaaaggtgcatggacatacgaggaagacaacttactcaaggcttacattaacaagtatggtgaaggaaaatggcatttaattcctc |
5468618 |
T |
|
| Q |
333 |
aaagagcaggt |
343 |
Q |
| |
|
||||||||||| |
|
|
| T |
5468619 |
aaagagcaggt |
5468629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 330
Target Start/End: Complemental strand, 21306437 - 21306329
Alignment:
| Q |
222 |
atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggca |
321 |
Q |
| |
|
||||||||| ||| |||| ||||||||||| |||||||| || |||||||| |||||||||||||||| || | | ||| ||||||||||||||| | |
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|
| T |
21306437 |
atatggagaataccggaggtgtgagaaaaggcgcatggacttacaaggaagatgagctactcaaggcttgcattaacacgtacggtgaaggaaaatggaa |
21306338 |
T |
|
| Q |
322 |
tttagttcc |
330 |
Q |
| |
|
||||||||| |
|
|
| T |
21306337 |
tttagttcc |
21306329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 88879 - 88992
Alignment:
| Q |
233 |
accagaggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccac |
332 |
Q |
| |
|
||||| ||||||| ||||||| | ||||| |||| |||||||| |||||||||| || || | ||||||||| |||||||||||||| ||||||| | |
|
|
| T |
88879 |
accagtggcgtgaaaaaaggtacctggacgaatgaagaagataacttactcaaggcatgcattaacaagtatggtcaaggaaaatggcatctagttcctc |
88978 |
T |
|
| Q |
333 |
aaagagcaggtata |
346 |
Q |
| |
|
||||||||||||| |
|
|
| T |
88979 |
gaagagcaggtata |
88992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 19846 - 19954
Alignment:
| Q |
239 |
ggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccacaaagag |
338 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| || |||||||||| || | ||| |||||| |||||||||||||||| |||| ||||| |
|
|
| T |
19846 |
ggcgttagaaaaggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaa |
19945 |
T |
|
| Q |
339 |
caggtataa |
347 |
Q |
| |
|
||||||||| |
|
|
| T |
19946 |
caggtataa |
19954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 23294 - 23402
Alignment:
| Q |
239 |
ggcgtgagaaaaggtgcatggacatatgaggaagataagctactcaaggcttgtatacagaagtatggtgaaggaaaatggcatttagttccacaaagag |
338 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| || |||||||||| || | ||| |||||| |||||||||||||||| |||| ||||| |
|
|
| T |
23294 |
ggcgttagaaaaggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaa |
23393 |
T |
|
| Q |
339 |
caggtataa |
347 |
Q |
| |
|
||||||||| |
|
|
| T |
23394 |
caggtataa |
23402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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