View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9316_low_15 (Length: 265)

Name: NF9316_low_15
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9316_low_15
NF9316_low_15
[»] chr8 (5 HSPs)
chr8 (1-122)||(1674392-1674513)
chr8 (125-239)||(1674225-1674339)
chr8 (10-122)||(16686121-16686233)
chr8 (1-122)||(20863688-20863809)
chr8 (194-234)||(20863931-20863971)
[»] chr6 (45 HSPs)
chr6 (122-239)||(4515137-4515254)
chr6 (1-127)||(4506018-4506144)
chr6 (1-122)||(4514966-4515087)
chr6 (1-123)||(4563876-4563998)
chr6 (1-89)||(4267011-4267099)
chr6 (1-122)||(4585802-4585923)
chr6 (1-89)||(4470002-4470090)
chr6 (4-122)||(4592397-4592515)
chr6 (1-122)||(4457760-4457881)
chr6 (4-122)||(4617188-4617306)
chr6 (1-77)||(4461334-4461410)
chr6 (120-232)||(4504411-4504523)
chr6 (1-122)||(4601955-4602076)
chr6 (132-244)||(4480687-4480799)
chr6 (3-82)||(4493161-4493240)
chr6 (125-244)||(4505851-4505970)
chr6 (120-234)||(3171745-3171859)
chr6 (120-234)||(4579436-4579550)
chr6 (1-119)||(4626120-4626238)
chr6 (1-89)||(4560705-4560793)
chr6 (19-122)||(4260017-4260120)
chr6 (128-239)||(4392048-4392159)
chr6 (5-123)||(4480858-4480976)
chr6 (120-234)||(4560510-4560624)
chr6 (1-122)||(4613563-4613684)
chr6 (5-121)||(3171908-3172024)
chr6 (120-232)||(4592237-4592349)
chr6 (125-244)||(4492949-4493068)
chr6 (120-239)||(4617021-4617140)
chr6 (13-122)||(4256468-4256578)
chr6 (4-54)||(4490203-4490253)
chr6 (120-234)||(4574312-4574426)
chr6 (1-122)||(4557291-4557412)
chr6 (120-244)||(4516315-4516439)
chr6 (120-234)||(4598175-4598289)
chr6 (120-234)||(4613732-4613846)
chr6 (140-232)||(4570978-4571070)
chr6 (1-89)||(4574507-4574595)
chr6 (13-122)||(4516487-4516596)
chr6 (1-67)||(4622363-4622429)
chr6 (193-234)||(4563715-4563756)
chr6 (11-120)||(4571140-4571249)
chr6 (120-244)||(4461117-4461241)
chr6 (120-232)||(4490369-4490481)
chr6 (10-38)||(4504251-4504279)
[»] chr5 (3 HSPs)
chr5 (1-122)||(24103165-24103286)
chr5 (1-118)||(27999944-28000061)
chr5 (125-239)||(28000118-28000232)
[»] chr3 (1 HSPs)
chr3 (1-122)||(1281280-1281401)
[»] scaffold0288 (1 HSPs)
scaffold0288 (1-122)||(3564-3685)
[»] chr7 (1 HSPs)
chr7 (10-122)||(3086586-3086698)
[»] scaffold0477 (2 HSPs)
scaffold0477 (125-234)||(4705-4814)
scaffold0477 (13-63)||(4543-4593)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1674513 - 1674392
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||| |||| ||||||||||||||  | || ||||    
T  1674513 agcatatgcgctggagtgccaatgttgtgttggccattttttgctgatcagccaacaaactgtagatttatttgtaatgaatggaagattggtatggaaa 1674414  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    ||||| ||||||||||||||||    
T  1674413 ttgatacgaatgtgaagagaga 1674392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 1674339 - 1674225
Alignment:
Q  125 atgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggaggtgt 224  Q
    |||||| ||||||||||||| ||||| ||||||| ||| ||| |||| ||||  || || | || || |||||||||||| |||||||| ||||| ||||    
T  1674339 atgaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgt 1674240  T
Q  225 tgcttaaacataatt 239  Q
    |||||||||| ||||    
T  1674239 tgcttaaacaaaatt 1674225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 16686121 - 16686233
Alignment:
Q  10 gctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaattgatgcga 109  Q
    |||||||| |||||||||||||||||||| |||| |||||| ||| |||| |  |||| | |||||||||||||| ||||  | || ||||||||  | |    
T  16686121 gctggagttccaatgttgtgttggccattttttgctgatcagccagcaaaatgcagatatatttgcaatgaatgggagattggcatggaaattgacacca 16686220  T
Q  110 atgtgaagagaga 122  Q
    |||||||||||||    
T  16686221 atgtgaagagaga 16686233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20863688 - 20863809
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||| |||||||||||||||||||| |||||||| |||| |||||| || |||||||  ||||   |||||||  ||||| ||||  |||| ||||    
T  20863688 agcatatgtgctggagtgccaatgttgtgctggccattttttgctgatcagccgacaaactgcagatacatttgcaacaaatgggagattgggatcgaaa 20863787  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    ||||  | ||||| ||||||||    
T  20863788 ttgacaccaatgtcaagagaga 20863809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 20863931 - 20863971
Alignment:
Q  194 atgaacttggagaaagtgataaaggaggtgttgcttaaaca 234  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  20863931 atgaacttggacaaagtgattaaggaggtgttgcttaaaca 20863971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 4515137 - 4515254
Alignment:
Q  122 aaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggagg 221  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||||| |||||||||||||||| || | |||||||||| |||||||| |||||||    
T  4515137 aaaatgaggaaaaaggttatggagttgaaaaagaaggcagacgaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggagg 4515236  T
Q  222 tgttgcttaaacataatt 239  Q
    ||||||||||||| ||||    
T  4515237 tgttgcttaaacaaaatt 4515254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 4506144 - 4506018
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| | ||||  | || ||||    
T  4506144 agcatatgcgctggagtgccaatgctgtgttggccgttctttggtgatcaaccaacaaactgtagatttatttgcaatgaattggagattggaatcgaaa 4506045  T
Q  101 ttgatgcgaatgtgaagagagaaaatg 127  Q
    ||||| | |||||||| ||||||||||    
T  4506044 ttgatactaatgtgaatagagaaaatg 4506018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4514966 - 4515087
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||  |||| ||||    
T  4514966 agcatatgcgctggagtgccaatgctttgttggcaattctttggtgatcaaccaacaaactgtagatttatttgcaatgaatgggagattgggatcgaaa 4515065  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    | |||  |||||||||||||||    
T  4515066 tcgatatgaatgtgaagagaga 4515087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4563998 - 4563876
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| || ||| |||||||||| ||||  |||| ||||    
T  4563998 agcatatgtgctggagttccaatgttgtgttggccattctttggtgatcagccaacaaactgtagacttatttacaatgaatgggagattgggatggaaa 4563899  T
Q  101 ttgatgcgaatgtgaagagagaa 123  Q
    | ||| ||||||| |||||||||    
T  4563898 tcgatacgaatgtaaagagagaa 4563876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 4267011 - 4267099
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagat 89  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||| ||||    
T  4267011 agcatatgtgctggagtgccaatgttgtgttggccattctttggtgatcagccaacaaactgtagatttatttgctatgaatgggagat 4267099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4585923 - 4585802
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||| || |||||||||||||| ||||  |||| |||     
T  4585923 agcatatgtgctggagtgccaatgttgtgttggccattcattgctgatcagccaacaaactgtagaattatttgcaatgaatgggagattgggatggaag 4585824  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    ||||  | ||||||||||||||    
T  4585823 ttgacaccaatgtgaagagaga 4585802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4470090 - 4470002
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| | ||||||| |||||||||||||| ||||    
T  4470090 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcagctagcaaattgtagatttatttgcaatgaatgggagat 4470002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 4592515 - 4592397
Alignment:
Q  4 atatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaattg 103  Q
    ||||| |||||| | |||||||||||||||||||||||| ||||||| |||||||||| |||| || ||| |||||||||| ||||  |||| |||||||    
T  4592515 atatgtgctggaattccaatgttgtgttggccattctttagtgatcagccaacaaactgtagacttatttacaatgaatgggagattgggatggaaattg 4592416  T
Q  104 atgcgaatgtgaagagaga 122  Q
    || ||||||| ||||||||    
T  4592415 atacgaatgtaaagagaga 4592397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4457881 - 4457760
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| | |||||||  | ||||||| |||||||||||||  ||||  |||| ||||    
T  4457881 agcatatgcgctggagtgccaatgctgcgttggccattctttggtgataagccaacaagttgtagatttatttgcaatgaatgagagattgggatggaaa 4457782  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    | ||| | ||||||||||||||    
T  4457781 tcgatacaaatgtgaagagaga 4457760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 4617306 - 4617188
Alignment:
Q  4 atatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaattg 103  Q
    ||||||||||||||||||||||||||||||||||| ||||  || || |||||| ||| ||||||| |||| ||||||||| ||||  | || ||||| |    
T  4617306 atatgcgctggagtgccaatgttgtgttggccattttttgccgaccagccaacagactgtagatttatttgtaatgaatgggagattggtatggaaatcg 4617207  T
Q  104 atgcgaatgtgaagagaga 122  Q
    || ||||||||||||||||    
T  4617206 atacgaatgtgaagagaga 4617188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4461410 - 4461334
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaa 77  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||||    
T  4461410 agcatatgtgctggagtgccgatgttgtgttggccattctttggtgatcagccagcaaactgtagatttatttgcaa 4461334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 4504411 - 4504523
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||| ||||||||||||||||||| ||||||| ||| |||||||| |||||||| || | || || |||||||||||| |||||||| |||||    
T  4504411 agaagatgaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaagga 4504510  T
Q  220 ggtgttgcttaaa 232  Q
     || |||||||||    
T  4504511 cgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4602076 - 4601955
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||| ||||||||||| |||||||||||||| || ||||  ||||| |||||||||| ||||||| |||| ||||||||| ||||  | || ||||    
T  4602076 agcatatgtgctggagtgccgatgttgtgttggcctttttttgccgatcagccaacaaactgtagatttatttgtaatgaatgggagattggtatggaaa 4601977  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    | ||| | ||||||||||||||    
T  4601976 tcgatacaaatgtgaagagaga 4601955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 4480799 - 4480687
Alignment:
Q  132 aaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggaggtgttgcttaa 231  Q
    ||||||||||||||||||| |||| || ||| |||||||| |||| ||| || | || || |||||||||||| |||||||| |||||||| ||||||||    
T  4480799 aaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaa 4480700  T
Q  232 acataatttgatt 244  Q
    ||| |||| ||||    
T  4480699 acaaaattagatt 4480687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 4493240 - 4493161
Alignment:
Q  3 catatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaat 82  Q
    |||||| || ||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||  ||||||||||||    
T  4493240 catatgtgccggagtgccaatgttgtgttggcctttctttagtgatcagccaacaaactgtagattgatttgcaatgaat 4493161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 4505970 - 4505851
Alignment:
Q  125 atgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggaggtgt 224  Q
    ||||||||||||| ||||||||||||||||| || | | ||||| || |||| ||| || | || || |||||||||||| ||||| || ||||||||||    
T  4505970 atgaggaaaaaggtcatggagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgt 4505871  T
Q  225 tgcttaaacataatttgatt 244  Q
    |||||||||| |||| ||||    
T  4505870 tgcttaaacaaaattagatt 4505851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 3171859 - 3171745
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||| ||| ||||||||||||||| ||||||| ||| ||||| || ||| |||| || | || || |||||||||||| |||||||| |||||    
T  3171859 agaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaagga 3171760  T
Q  220 ggtgttgcttaaaca 234  Q
    ||| |||||||||||    
T  3171759 ggtcttgcttaaaca 3171745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 4579550 - 4579436
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||| ||||||| || |||||||| |||||||| || |||||||| |||| ||| || | || || ||||||||||||||||||||| |||||    
T  4579550 agaagatgaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaagga 4579451  T
Q  220 ggtgttgcttaaaca 234  Q
    |||||| || |||||    
T  4579450 ggtgttactcaaaca 4579436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4626238 - 4626120
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    ||||||||||||||||| |||||| |||||||||||   |||| |||||| |||||||| | ||||| | |||||||||||||| ||||  | || ||||    
T  4626238 agcatatgcgctggagttccaatgctgtgttggccaaattttgctgatcagccaacaaattgtagatatatttgcaatgaatgggagattggaatggaaa 4626139  T
Q  101 ttgatgcgaatgtgaagag 119  Q
    | ||||| |||||||||||    
T  4626138 tcgatgctaatgtgaagag 4626120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4560793 - 4560705
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagat 89  Q
    |||||||| |||||||| |||||||||||||||||||| ||||  ||||| ||| ||||||  |||| | |||||||||||||||||||    
T  4560793 agcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagat 4560705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 4260017 - 4260120
Alignment:
Q  19 ccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaattgatgcgaatgtgaaga 118  Q
    |||||||||||||||||||| |||| |||||| |||||||||| ||||||| |||| || |||||| ||||  | ||||||||| || | |||||||| |    
T  4260017 ccaatgttgtgttggccattttttgctgatcagccaacaaactgtagatttatttgtaacgaatgggagattggaattgaaattaatactaatgtgaaaa 4260116  T
Q  119 gaga 122  Q
    ||||    
T  4260117 gaga 4260120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 4392048 - 4392159
Alignment:
Q  128 aggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggaggtgttgc 227  Q
    ||||||||||| || |||||||| ||||||| | | ||||||||  ||| ||| || |||| || |||||||||||| ||| |||| |||||||| ||||    
T  4392048 aggaaaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgc 4392147  T
Q  228 ttaaacataatt 239  Q
    ||||||||||||    
T  4392148 ttaaacataatt 4392159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 4480976 - 4480858
Alignment:
Q  5 tatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctgga-ttgaaattg 103  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||| ||| | |||  |||| || |||||||||||||| |||| |||| | ||||| |    
T  4480976 tatgtgctggagtgccaatgttgtgttggccattctttgccgatcagccacctaaccgtagaattatttgcaatgaatgggagat-tggactcgaaatcg 4480878  T
Q  104 atgcgaatgtgaagagagaa 123  Q
    || | |||||||||||||||    
T  4480877 ataccaatgtgaagagagaa 4480858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 4560624 - 4560510
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||| |||||||||||||| |||| || ||||  || | | |||| |||| ||| || | || || ||||||||||||||||||||| |||||    
T  4560624 agaagatgaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaagga 4560525  T
Q  220 ggtgttgcttaaaca 234  Q
    |||||||||||||||    
T  4560524 ggtgttgcttaaaca 4560510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4613563 - 4613684
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||| ||||||||||||||||||||||||||||| || |  ||||| ||| ||||||  |||| | | |||||||||||| | ||  |||| ||||    
T  4613563 agcatatgtgctggagtgccaatgttgtgttggccatttttcgcggatcagccagcaaactgcagatatatatgcaatgaatgggaaattgggatggaaa 4613662  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    ||||  | ||||||||||||||    
T  4613663 ttgacaccaatgtgaagagaga 4613684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 3172024 - 3171908
Alignment:
Q  5 tatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaattga 104  Q
    |||| |||||| |||||||||||||| ||||||| |||| |||||||||| | |||  |||| || ||||| | |||||||||||  |||| ||||||||    
T  3172024 tatgtgctggaatgccaatgttgtgtaggccattttttgctgatcaaccacctaacagtagaattatttgccaagaatggaagattgggatggaaattga 3171925  T
Q  105 tgcgaatgtgaagagag 121  Q
    | | ||||| |||||||    
T  3171924 taccaatgtaaagagag 3171908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 4592349 - 4592237
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||||||||||| || |||||||| ||||||| ||| ||| |||| |||| ||| || | || ||  ||||||||||| ||| |||| |||||    
T  4592349 agaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaagga 4592250  T
Q  220 ggtgttgcttaaa 232  Q
    |||||||||||||    
T  4592249 ggtgttgcttaaa 4592237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 4493068 - 4492949
Alignment:
Q  125 atgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggaggtgt 224  Q
    ||||||| ||| |||| ||||||||||||||||| ||| ||||||||   || ||| || | || || |||||||||||| |||||||| ||||| || |    
T  4493068 atgaggagaaaagccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtct 4492969  T
Q  225 tgcttaaacataatttgatt 244  Q
    |||||||||| |||| ||||    
T  4492968 tgcttaaacaaaattagatt 4492949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 4617140 - 4617021
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    ||||||||| | ||||||||||||||||||| ||||||| ||| ||| |||| ||||  || || | || || |||||||||| | ||||| || |||||    
T  4617140 agaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaagga 4617041  T
Q  220 ggtgttgcttaaacataatt 239  Q
     |||||||||||||| ||||    
T  4617040 tgtgttgcttaaacaaaatt 4617021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 4256468 - 4256578
Alignment:
Q  13 ggagtgccaatgttgtgttggccattctttggtgatca-accaacaaactatagatttgtttgcaatgaatggaagatctggattgaaattgatgcgaat 111  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||||| |||| |  |||||| ||||  | ||||||||  || | |||    
T  4256468 ggagttccaatgttgtgttggccattttttgctgatcagaccaacaaactgtagatttatttgtagcgaatgggagattggaattgaaatcaatactaat 4256567  T
Q  112 gtgaagagaga 122  Q
    |||||||||||    
T  4256568 gtgaagagaga 4256578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 4490203 - 4490253
Alignment:
Q  4 atatgcgctggagtgccaatgttgtgttggccattctttggtgatcaacca 54  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  4490203 atatgtgctggagtgccaatgttgtgttggccattttttgctgatcaacca 4490253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 4574426 - 4574312
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||| |||| ||||| ||| |||| |||||||| || | |||||| |||| ||| || | || || ||  ||||||||||||||||| |||||    
T  4574426 agaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaagga 4574327  T
Q  220 ggtgttgcttaaaca 234  Q
    |||||||||||||||    
T  4574326 ggtgttgcttaaaca 4574312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4557412 - 4557291
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||  |||||||| |||||||||||||||||||| |||| |||||| ||| ||||||  |||| | ||||||||  |||| ||||  | || ||||    
T  4557412 agcatatctgctggagttccaatgttgtgttggccattttttgctgatcagccagcaaactgcagatatatttgcaatacatgggagattggcatggaaa 4557313  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    ||||  | ||||||||||||||    
T  4557312 ttgacaccaatgtgaagagaga 4557291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 4516439 - 4516315
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||| ||||||||||||| ||||| ||||||| ||| |||||||| ||||  || || | || ||   |||||||||| |||||||| |||||    
T  4516439 agaagatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaagga 4516340  T
Q  220 ggtgttgcttaaacataatttgatt 244  Q
    |||| |||| ||||| |||| ||||    
T  4516339 ggtgctgctcaaacaaaattagatt 4516315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 4598289 - 4598175
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    ||||||||||| ||||| | || || ||||| | |||||  || ||||| || |||||||| || | || || ||||||||| ||||||||||| |||||    
T  4598289 agaaaatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaagga 4598190  T
Q  220 ggtgttgcttaaaca 234  Q
    |||||| ||||||||    
T  4598189 ggtgtttcttaaaca 4598175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 4613732 - 4613846
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    ||||||||||| ||||||| || |||||||| ||||||| ||| |||||||| ||||  || || | || ||  ||||||||||| |||||||| || ||    
T  4613732 agaaaatgaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatga 4613831  T
Q  220 ggtgttgcttaaaca 234  Q
    |||| |||| |||||    
T  4613832 ggtgctgctgaaaca 4613846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 4571070 - 4570978
Alignment:
Q  140 atggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggaggtgttgcttaaa 232  Q
    |||||| |||| |||||||  || |||||||| |||| ||| || | || || |||||||||||| |||||||| |||||||| |||||||||    
T  4571070 atggagatgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 4570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4574595 - 4574507
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagat 89  Q
    |||||||| |||||||| |||||||| ||||||||||| |||   ||||| ||| ||||||  |||| | |||||||||||||| ||||    
T  4574595 agcatatgtgctggagttccaatgttatgttggccatttttttcggatcagccagcaaactgcagatatatttgcaatgaatgggagat 4574507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 4516596 - 4516487
Alignment:
Q  13 ggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctgga-ttgaaattgatgcgaat 111  Q
    ||||| ||||||||||||||||| || |||| ||| || |||||||| |  |||| | |||||||||||||| |||| ||||   ||||||||| | |||    
T  4516596 ggagtaccaatgttgtgttggcctttttttgctgagcagccaacaaattgcagatatatttgcaatgaatgggagat-tggagcagaaattgataccaat 4516498  T
Q  112 gtgaagagaga 122  Q
    |||||||||||    
T  4516497 gtgaagagaga 4516487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4622429 - 4622363
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagat 67  Q
    |||||||| ||||||||  ||||| ||||||||||||| || | |||||| |||||||||| |||||    
T  4622429 agcatatgtgctggagtttcaatgctgtgttggccatttttcgctgatcagccaacaaactgtagat 4622363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 4563756 - 4563715
Alignment:
Q  193 catgaacttggagaaagtgataaaggaggtgttgcttaaaca 234  Q
    |||||||||||| |||||||| |||||||| |||||||||||    
T  4563756 catgaacttggacaaagtgatcaaggaggttttgcttaaaca 4563715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 4571249 - 4571140
Alignment:
Q  11 ctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaattgatgcgaa 110  Q
    ||||||| ||||||||||||| |||||| |||| |||||| ||| |||||| ||||| | | ||||||  |||| ||||  | || ||||| ||| | ||    
T  4571249 ctggagttccaatgttgtgttagccattttttgctgatcagccagcaaactgtagatatatctgcaatacatgggagattggaatcgaaatcgatactaa 4571150  T
Q  111 tgtgaagaga 120  Q
    ||||||||||    
T  4571149 tgtgaagaga 4571140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 4461241 - 4461117
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||| |||||| |||||| || || |||||||| || ||||| ||||||| ||| ||   || || || ||||||||| ||||| || |||||    
T  4461241 agaagatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaagga 4461142  T
Q  220 ggtgttgcttaaacataatttgatt 244  Q
     || ||||||||||| |||| ||||    
T  4461141 tgtcttgcttaaacaaaattagatt 4461117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 4490369 - 4490481
Alignment:
Q  120 agaaaatgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaagga 219  Q
    |||| |||||| ||||||| | ||||||||| ||||||| ||  |||||||| ||||| || ||   || || |||||||||||| |||||||| |||||    
T  4490369 agaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaagga 4490468  T
Q  220 ggtgttgcttaaa 232  Q
     ||  ||||||||    
T  4490469 tgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 4504251 - 4504279
Alignment:
Q  10 gctggagtgccaatgttgtgttggccatt 38  Q
    |||||||||||||||||||||||||||||    
T  4504251 gctggagtgccaatgttgtgttggccatt 4504279  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 24103286 - 24103165
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctgga-ttgaa 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||| |||| | |||    
T  24103286 agcatatgtgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactgtagatttatttgctatgaatgggagat-tggactcgaa 24103188  T
Q  100 attgatgcgaatgtgaagagaga 122  Q
    || ||| | ||||||||||||||    
T  24103187 atcgatacaaatgtgaagagaga 24103165  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 27999944 - 28000061
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    ||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||| ||||||| |||| ||||||||||||||  | || ||||    
T  27999944 agcatatgcgctggagtgccaatgttgtgttggtcattttttgctgatcagccaacaaactgtagatttatttgtaatgaatggaagattggtatggaaa 28000043  T
Q  101 ttgatgcgaatgtgaaga 118  Q
    |||||  |||||||||||    
T  28000044 ttgatatgaatgtgaaga 28000061  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 28000118 - 28000232
Alignment:
Q  125 atgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggaggtgt 224  Q
    |||||| ||||||||||||||||||| || |||| ||| ||| |||| ||||  || || | || || |||||||||||| |||||||| ||||| ||||    
T  28000118 atgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgt 28000217  T
Q  225 tgcttaaacataatt 239  Q
    || ||||||| ||||    
T  28000218 tgtttaaacaaaatt 28000232  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1281401 - 1281280
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaa 100  Q
    |||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||| ||| ||||||| |||| ||||||||||||||  | || ||||    
T  1281401 agcatatgtgctggagtgccaatgttgtgttggccattttttgctgatcagccaacagactgtagatttatttgtaatgaatggaagattggtatggaaa 1281302  T
Q  101 ttgatgcgaatgtgaagagaga 122  Q
    | ||| | ||||||||||||||    
T  1281301 tcgatacaaatgtgaagagaga 1281280  T

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Target: scaffold0288 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 3564 - 3685
Alignment:
Q  1 agcatatgcgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctgga-ttgaa 99  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||| |||| |||| |||||    
T  3564 agcatatgcgctggagtaccaatgctttgttggccattctttggtgatcagccaacaaactgtagatttatttgcaacgaatgggagat-tggacttgaa 3662  T
Q  100 attgatgcgaatgtgaagagaga 122  Q
    || |||  | |||||||||||||    
T  3663 atcgatatggatgtgaagagaga 3685  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 3086698 - 3086586
Alignment:
Q  10 gctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactatagatttgtttgcaatgaatggaagatctggattgaaattgatgcga 109  Q
    ||||||||||||||||||||||||||||| | ||| |||||||||| ||||| ||||| | | ||||||  |||| ||||  | |||||||| ||| | |    
T  3086698 gctggagtgccaatgttgtgttggccattttatggagatcaaccaataaactgtagatatatctgcaatatatgggagattggaattgaaatcgatacta 3086599  T
Q  110 atgtgaagagaga 122  Q
    |||||||||||||    
T  3086598 atgtgaagagaga 3086586  T

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Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 4705 - 4814
Alignment:
Q  125 atgaggaaaaaggccatggagttgaaaaagaaggtagacgaggacaccagacttggcgggtcttgatgcatgaacttggagaaagtgataaaggaggtgt 224  Q
    |||||| ||||||||||||||||||| ||||||| ||| ||| |||||||   ||| || | || || |||||||||||| |||||||| ||||||||      
T  4705 atgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggaggtca 4804  T
Q  225 tgcttaaaca 234  Q
    ||||||||||    
T  4805 tgcttaaaca 4814  T

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Target: scaffold0477; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 4543 - 4593
Alignment:
Q  13 ggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactat 63  Q
    |||||||||||||||||||||||||| || |  ||||| ||||||||||||    
T  4543 ggagtgccaatgttgtgttggccatttttcgccgatcagccaacaaactat 4593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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