View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9316_low_16 (Length: 253)
Name: NF9316_low_16
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 23931124 - 23930887
Alignment:
| Q |
14 |
cagagaagaagtaaaaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23931124 |
cagagaagaagtaaaaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaac |
23931025 |
T |
|
| Q |
114 |
agcatgtgctgaagcttttccaccattatttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctgaaatatctgtt |
213 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23931024 |
agcatgtgcagaagcttttccaccattatttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctgaaatatctgtt |
23930925 |
T |
|
| Q |
214 |
gtatataaagtataagggtcacttggatataacttaat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23930924 |
gtatataaagtataagggtcacttggatataatttaat |
23930887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 50121665 - 50121894
Alignment:
| Q |
19 |
aagaagtaaaaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacagcat |
118 |
Q |
| |
|
|||||||||||||||| | || ||||||| ||| || |||||||| | ||||| |||||||||||||||||||| ||||||||||| | |||| ||| |
|
|
| T |
50121665 |
aagaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccat |
50121764 |
T |
|
| Q |
119 |
gtgctgaagcttttccaccattatttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctgaaatatctgttgtata |
218 |
Q |
| |
|
|||| ||| ||||||||||| |||||| |||||||| || | |||||| |||||||||||||||| ||| || ||||||||||| ||||| |||||||| |
|
|
| T |
50121765 |
gtgcataaggttttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtata |
50121864 |
T |
|
| Q |
219 |
taaagtataagggtcacttggatataactt |
248 |
Q |
| |
|
||||| ||||| ||| |||||| |||||| |
|
|
| T |
50121865 |
caaagtgtaaggatcatttggatgtaactt |
50121894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 50112084 - 50112316
Alignment:
| Q |
19 |
aagaagtaaaaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacagcat |
118 |
Q |
| |
|
|||||||||||||||| || || ||||||| ||| || |||||||| || ||||| |||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
50112084 |
aagaagtaaaaatcaagtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccat |
50112183 |
T |
|
| Q |
119 |
gtgctgaagcttttccac---cattatttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctgaaatatctgttgt |
215 |
Q |
| |
|
|||| || || |||| ||| |||||| |||||||| || | ||||||||| ||||||| ||||| || |||||||| |||| | ||| || || |
|
|
| T |
50112184 |
gtgcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctacatcagtggt |
50112283 |
T |
|
| Q |
216 |
atataaagtataagggtcacttggatataactt |
248 |
Q |
| |
|
||| ||||||||||| ||| | ||||| ||||| |
|
|
| T |
50112284 |
atacaaagtataaggatcattaggatacaactt |
50112316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University