View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9316_low_18 (Length: 248)
Name: NF9316_low_18
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_18 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 18342763 - 18342984
Alignment:
| Q |
25 |
attcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342763 |
attcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
18342862 |
T |
|
| Q |
125 |
tacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcata |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342863 |
tacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcata |
18342962 |
T |
|
| Q |
225 |
ccgtcgattactagctcctatg |
246 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
18342963 |
ccgtcgattactagctcctatg |
18342984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 48288709 - 48288862
Alignment:
| Q |
27 |
tcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagta |
126 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |
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| T |
48288709 |
tcgagttccttttgaatttccttctttatcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttctttacaa--- |
48288805 |
T |
|
| Q |
127 |
cgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
185 |
Q |
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||| |||| | ||| ||||||||||||||||||||||||||||||| |||| |||| |
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| T |
48288806 |
-gtataatt-gactcctaatcacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 36840536 - 36840757
Alignment:
| Q |
25 |
attcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840536 |
attcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
36840635 |
T |
|
| Q |
125 |
tacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcata |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840636 |
tacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcata |
36840735 |
T |
|
| Q |
225 |
ccgtcgattactagctcctatg |
246 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
36840736 |
ccgtcgattactagctcctatg |
36840757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 164601 - 164380
Alignment:
| Q |
25 |
attcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
124 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164601 |
attctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
164502 |
T |
|
| Q |
125 |
tacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcata |
224 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
164501 |
tacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcata |
164402 |
T |
|
| Q |
225 |
ccgtcgattactagctcctatg |
246 |
Q |
| |
|
|||| ||||||||||||||||| |
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| T |
164401 |
ccgttgattactagctcctatg |
164380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 14249125 - 14249346
Alignment:
| Q |
25 |
attcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
124 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14249125 |
attctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
14249224 |
T |
|
| Q |
125 |
tacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcata |
224 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14249225 |
tacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcata |
14249324 |
T |
|
| Q |
225 |
ccgtcgattactagctcctatg |
246 |
Q |
| |
|
|||| ||||||||||||||||| |
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| T |
14249325 |
ccgttgattactagctcctatg |
14249346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 954 - 733
Alignment:
| Q |
25 |
attcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||| || ||||| |||||||| |||||| || || || ||||| ||||||||||||| |
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|
| T |
954 |
attcgagttccttttggatttccttcttgatcaatgacaacggcagcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacaag |
855 |
T |
|
| Q |
125 |
tacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcata |
224 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||||||||| |||||| |
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|
| T |
854 |
tacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcata |
755 |
T |
|
| Q |
225 |
ccgtcgattactagctcctatg |
246 |
Q |
| |
|
|| |||||||||||||||||| |
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|
| T |
754 |
tcggcgattactagctcctatg |
733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
139 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
239 |
ctcctatg |
246 |
Q |
| |
|
|||||||| |
|
|
| T |
46699227 |
ctcctatg |
46699234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21827021 - 21827064
Alignment:
| Q |
1 |
ctttggaagaggtggaagcattcgattcgagttccttttggatt |
44 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
21827021 |
ctttggaagaggtggaagcattcgtttcgagttctttttggatt |
21827064 |
T |
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Back To:
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