View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9316_low_19 (Length: 238)
Name: NF9316_low_19
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 23930375 - 23930598
Alignment:
| Q |
15 |
aataataatgcgataaaagtagtctaatgtgttatggtcatatcatgtcggtgttggacactggacaaactttcgatcagaagtgttggttctaatggat |
114 |
Q |
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| T |
23930375 |
aataataatgcgaaaaaagtagtctaatgtgttatggtcatatcatgtcggtgttggacactggacagactttcgatcagaagtgttggttctaatggat |
23930474 |
T |
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| Q |
115 |
tttgtttctctaatgttgttaattgtacctgtttgttttttgcaggcatgaaacagagaaccgtttaagagtacacataacagatgcaaacaagcaaaga |
214 |
Q |
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| T |
23930475 |
tttgtttctctaatgttgttaattgtacctgtttgttttttgcaggcatgaaacagagaaccgtttaagagtacacataacagatgcaaacaagcaaaga |
23930574 |
T |
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| Q |
215 |
tgggaagtaccatacaaccttatc |
238 |
Q |
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| T |
23930575 |
tgggaagtaccatacaaccttatc |
23930598 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 28486801 - 28486761
Alignment:
| Q |
64 |
ggtgttggacactggacaaactttcgatcagaagtgttggt |
104 |
Q |
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| T |
28486801 |
ggtgttggacactggacacaccttcgatcagaagtgttggt |
28486761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 29799214 - 29799174
Alignment:
| Q |
64 |
ggtgttggacactggacaaactttcgatcagaagtgttggt |
104 |
Q |
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| T |
29799214 |
ggtgttggacactggacacaccttcgatcagaagtgttggt |
29799174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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